KDM2B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • KDM2B
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:13.7 nTPM
GTEx:13.7 nTPM
FANTOM5:10.1 Scaled Tags Per Million
Macaque:15.6 nTPM
Mouse:20.3 nTPM
Rat:28.8 nTPM

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - PROTEINTALKS DB MS
Median intensity ND
Sample Intensity
Vagina_01
ND

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 13.7
Samples: 170

Max nTPM: 28.6
Min nTPM: 5.1
Std nTPM: 5.3
Median nTPM: 12.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 28.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 28.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 27.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 26.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 25.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 24.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 24.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 23.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 23.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 23.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 22.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 22.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 21.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 21.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 21.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 21.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 21.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 20.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 20.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 20.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 20.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 20.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 20.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 20.1
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 20.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 19.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 19.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 19.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 19.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 19.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 19.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 19.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 19.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 19.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 19.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 18.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 18.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 18.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 18.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 18.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 18.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 18.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 18.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 17.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 17.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 17.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 17.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 17.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 17.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 17.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 16.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 16.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 16.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 16.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 15.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 15.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 15.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 15.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 15.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 15.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 15.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 15.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 15.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 15.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 15.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 15.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 15.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 15.0
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 15.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 14.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 14.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 14.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 14.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 14.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 13.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 13.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 13.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 13.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 13.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 13.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 13.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 13.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 13.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 13.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 12.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 12.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 12.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 12.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 12.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 12.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 12.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 12.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 11.9
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 11.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 11.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 11.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 11.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 11.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 11.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 11.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 11.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 11.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 10.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 10.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 10.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 10.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 10.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 10.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 10.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 10.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 10.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 10.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 10.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 10.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 10.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 10.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 10.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 10.0
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 9.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 9.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 9.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 9.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 9.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 9.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 9.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 9.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 9.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 9.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 9.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 8.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 8.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 8.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 8.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 8.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 8.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 8.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 8.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 8.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 8.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 8.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 8.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 8.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 8.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 8.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 8.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 7.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 7.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 7.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 7.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 7.7
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 7.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 7.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 7.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 7.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 7.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 7.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 7.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 7.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 7.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 7.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 7.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 7.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 6.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 6.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 6.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 6.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 6.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 5.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 5.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 5.1
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

10.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 10.1
FF:10204-103F6 68 years, female 10.1

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.6
Macaque sample Sample description nTPM
Vagina
nTPM: 15.6
Samples: 1

Max nTPM: 15.6
Min nTPM: 15.6
Sample A 15.6

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.3
Mouse sample Sample description nTPM
Vagina
nTPM: 20.3
Samples: 2

Max nTPM: 22.1
Min nTPM: 18.4
Sample A 18.4
Sample B 22.1

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.8
Rat sample Sample description nTPM
Vagina
nTPM: 28.9
Samples: 2

Max nTPM: 40.9
Min nTPM: 16.8
Sample A 16.8
Sample A 40.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.