A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
23.3
nTPM
Schmiedel:
15.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
Classical monocyte nTPM: 2.8
Samples: 6
Max nTPM: 3.6
Min nTPM: 2.0
P10809_1003
3.6
P10809_1020
2.1
P10809_1039
3.2
P10809_1058
3.1
P10809_1080
2.0
P10809_1107
2.6
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.9
Min nTPM: 0.6
P10809_1004
3.1
P10809_1023
1.7
P10809_1042
0.9
P10809_1061
3.9
P10809_1081
3.8
P10809_1108
0.6
Non-classical monocyte nTPM: 1.7
Samples: 5
Max nTPM: 4.5
Min nTPM: 0.8
P10809_1005
1.1
P10809_1053
0.8
P10809_1072
4.5
P10809_1082
1.3
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.3
Monaco sample
nTPM
Classical monocyte nTPM: 22.8
Samples: 4
Max nTPM: 24.2
Min nTPM: 18.9
RHH5313_R3680
24.2
RHH5221_R3593
24.1
RHH5250_R3622
18.9
RHH5279_R3651
24.1
Intermediate monocyte nTPM: 23.2
Samples: 4
Max nTPM: 30.5
Min nTPM: 16.4
RHH5314_R3681
30.5
RHH5222_R3594
24.8
RHH5251_R3623
16.4
RHH5280_R3652
21.3
Non-classical monocyte nTPM: 18.1
Samples: 4
Max nTPM: 19.7
Min nTPM: 15.9
RHH5315_R3682
19.7
RHH5223_R3595
15.9
RHH5252_R3624
19.0
RHH5281_R3653
17.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
Schmiedel sample id
TPM
Classical monocyte TPM: 15.2
Samples: 91
Max TPM: 20.0
Min TPM: 9.4
MONOCYTES_1
20.0
MONOCYTES_2
19.3
MONOCYTES_3
18.6
MONOCYTES_4
18.5
MONOCYTES_5
18.4
MONOCYTES_6
18.2
MONOCYTES_7
18.2
MONOCYTES_8
18.2
MONOCYTES_9
18.1
MONOCYTES_10
18.0
MONOCYTES_11
18.0
MONOCYTES_12
17.9
MONOCYTES_13
17.7
MONOCYTES_14
17.6
MONOCYTES_15
17.5
MONOCYTES_16
17.4
MONOCYTES_17
17.3
MONOCYTES_18
17.1
MONOCYTES_19
17.0
MONOCYTES_20
16.9
MONOCYTES_21
16.9
MONOCYTES_22
16.8
MONOCYTES_23
16.8
MONOCYTES_24
16.8
MONOCYTES_25
16.7
MONOCYTES_26
16.6
MONOCYTES_27
16.4
MONOCYTES_28
16.3
MONOCYTES_29
16.2
MONOCYTES_30
16.2
MONOCYTES_31
16.2
MONOCYTES_32
16.0
MONOCYTES_33
16.0
MONOCYTES_34
16.0
MONOCYTES_35
16.0
MONOCYTES_36
16.0
MONOCYTES_37
15.9
MONOCYTES_38
15.8
MONOCYTES_39
15.8
MONOCYTES_40
15.6
MONOCYTES_41
15.6
MONOCYTES_42
15.5
MONOCYTES_43
15.4
MONOCYTES_44
15.4
MONOCYTES_45
15.2
MONOCYTES_46
15.2
MONOCYTES_47
15.2
MONOCYTES_48
15.2
MONOCYTES_49
15.1
MONOCYTES_50
15.1
MONOCYTES_51
15.0
MONOCYTES_52
15.0
MONOCYTES_53
14.9
MONOCYTES_54
14.8
MONOCYTES_55
14.7
MONOCYTES_56
14.7
MONOCYTES_57
14.6
MONOCYTES_58
14.6
MONOCYTES_59
14.5
MONOCYTES_60
14.4
MONOCYTES_61
14.2
MONOCYTES_62
14.2
MONOCYTES_63
14.2
MONOCYTES_64
14.1
MONOCYTES_65
14.1
MONOCYTES_66
14.0
MONOCYTES_67
13.9
MONOCYTES_68
13.8
MONOCYTES_69
13.7
MONOCYTES_70
13.7
MONOCYTES_71
13.6
MONOCYTES_72
13.4
MONOCYTES_73
13.4
MONOCYTES_74
13.4
MONOCYTES_75
13.3
MONOCYTES_76
13.2
MONOCYTES_77
13.0
MONOCYTES_78
12.9
MONOCYTES_79
12.9
MONOCYTES_80
12.7
MONOCYTES_81
12.6
MONOCYTES_82
12.4
MONOCYTES_83
12.4
MONOCYTES_84
12.0
MONOCYTES_85
12.0
MONOCYTES_86
11.4
MONOCYTES_87
11.4
MONOCYTES_88
11.2
MONOCYTES_89
10.0
MONOCYTES_90
9.9
MONOCYTES_91
9.4
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Non-classical monocyte TPM: 14.1
Samples: 90
Max TPM: 20.4
Min TPM: 9.4
M2_1
20.4
M2_2
18.8
M2_3
18.7
M2_4
18.6
M2_5
18.4
M2_6
18.0
M2_7
18.0
M2_8
17.7
M2_9
17.5
M2_10
17.3
M2_11
17.0
M2_12
16.9
M2_13
16.8
M2_14
16.7
M2_15
16.7
M2_16
16.6
M2_17
16.1
M2_18
15.9
M2_19
15.9
M2_20
15.9
M2_21
15.8
M2_22
15.8
M2_23
15.7
M2_24
15.5
M2_25
15.3
M2_26
15.2
M2_27
15.1
M2_28
15.0
M2_29
14.9
M2_30
14.8
M2_31
14.7
M2_32
14.7
M2_33
14.7
M2_34
14.7
M2_35
14.6
M2_36
14.5
M2_37
14.5
M2_38
14.5
M2_39
14.4
M2_40
14.3
M2_41
14.3
M2_42
14.2
M2_43
14.2
M2_44
14.2
M2_45
14.2
M2_46
14.0
M2_47
14.0
M2_48
13.9
M2_49
13.8
M2_50
13.7
M2_51
13.6
M2_52
13.5
M2_53
13.5
M2_54
13.4
M2_55
13.4
M2_56
13.3
M2_57
13.1
M2_58
12.9
M2_59
12.8
M2_60
12.8
M2_61
12.8
M2_62
12.7
M2_63
12.6
M2_64
12.5
M2_65
12.5
M2_66
12.5
M2_67
12.4
M2_68
12.4
M2_69
12.4
M2_70
12.4
M2_71
12.4
M2_72
12.3
M2_73
12.1
M2_74
12.1
M2_75
12.1
M2_76
12.0
M2_77
11.9
M2_78
11.7
M2_79
11.7
M2_80
11.6
M2_81
11.5
M2_82
11.4
M2_83
11.3
M2_84
11.0
M2_85
10.9
M2_86
10.9
M2_87
10.3
M2_88
10.2
M2_89
9.5
M2_90
9.4
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