A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
575.0
nTPM
Monaco:
866.9
nTPM
Schmiedel:
203.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
575.0
HPA sample
nTPM
Classical monocyte nTPM: 254.1
Samples: 6
Max nTPM: 345.2
Min nTPM: 207.8
P10809_1003
210.4
P10809_1020
259.8
P10809_1039
345.2
P10809_1058
219.5
P10809_1080
281.7
P10809_1107
207.8
Intermediate monocyte nTPM: 404.2
Samples: 6
Max nTPM: 533.5
Min nTPM: 294.4
P10809_1004
366.5
P10809_1023
521.4
P10809_1042
533.5
P10809_1061
397.1
P10809_1081
312.3
P10809_1108
294.4
Non-classical monocyte nTPM: 575.0
Samples: 5
Max nTPM: 918.1
Min nTPM: 347.9
P10809_1005
347.9
P10809_1053
804.5
P10809_1072
918.1
P10809_1082
375.9
P10809_1109
428.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
866.9
Monaco sample
nTPM
Classical monocyte nTPM: 570.6
Samples: 4
Max nTPM: 874.0
Min nTPM: 265.2
RHH5313_R3680
627.6
RHH5221_R3593
874.0
RHH5250_R3622
265.2
RHH5279_R3651
515.4
Intermediate monocyte nTPM: 705.2
Samples: 4
Max nTPM: 887.4
Min nTPM: 436.6
RHH5314_R3681
887.4
RHH5222_R3594
729.7
RHH5251_R3623
436.6
RHH5280_R3652
766.9
Non-classical monocyte nTPM: 866.9
Samples: 4
Max nTPM: 1204.8
Min nTPM: 513.0
RHH5315_R3682
1204.8
RHH5223_R3595
820.4
RHH5252_R3624
513.0
RHH5281_R3653
929.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
203.6
Schmiedel sample id
TPM
Classical monocyte TPM: 57.7
Samples: 91
Max TPM: 153.8
Min TPM: 28.8
MONOCYTES_1
153.8
MONOCYTES_2
129.4
MONOCYTES_3
108.7
MONOCYTES_4
103.9
MONOCYTES_5
97.3
MONOCYTES_6
88.2
MONOCYTES_7
87.6
MONOCYTES_8
78.6
MONOCYTES_9
78.6
MONOCYTES_10
77.5
MONOCYTES_11
76.9
MONOCYTES_12
74.9
MONOCYTES_13
71.2
MONOCYTES_14
70.9
MONOCYTES_15
70.2
MONOCYTES_16
69.5
MONOCYTES_17
69.1
MONOCYTES_18
68.9
MONOCYTES_19
68.4
MONOCYTES_20
67.6
MONOCYTES_21
67.6
MONOCYTES_22
65.4
MONOCYTES_23
64.9
MONOCYTES_24
64.9
MONOCYTES_25
64.0
MONOCYTES_26
63.1
MONOCYTES_27
62.3
MONOCYTES_28
61.8
MONOCYTES_29
60.6
MONOCYTES_30
59.4
MONOCYTES_31
59.2
MONOCYTES_32
59.1
MONOCYTES_33
58.6
MONOCYTES_34
58.4
MONOCYTES_35
58.4
MONOCYTES_36
58.1
MONOCYTES_37
57.6
MONOCYTES_38
56.6
MONOCYTES_39
56.0
MONOCYTES_40
55.4
MONOCYTES_41
55.1
MONOCYTES_42
55.0
MONOCYTES_43
54.4
MONOCYTES_44
54.3
MONOCYTES_45
53.5
MONOCYTES_46
53.3
MONOCYTES_47
52.7
MONOCYTES_48
52.3
MONOCYTES_49
52.0
MONOCYTES_50
51.8
MONOCYTES_51
51.7
MONOCYTES_52
51.5
MONOCYTES_53
51.4
MONOCYTES_54
50.8
MONOCYTES_55
49.8
MONOCYTES_56
49.7
MONOCYTES_57
49.5
MONOCYTES_58
49.3
MONOCYTES_59
48.8
MONOCYTES_60
48.6
MONOCYTES_61
48.1
MONOCYTES_62
48.0
MONOCYTES_63
47.4
MONOCYTES_64
46.6
MONOCYTES_65
46.3
MONOCYTES_66
46.3
MONOCYTES_67
45.6
MONOCYTES_68
45.1
MONOCYTES_69
45.1
MONOCYTES_70
44.6
MONOCYTES_71
44.5
MONOCYTES_72
44.3
MONOCYTES_73
44.3
MONOCYTES_74
43.0
MONOCYTES_75
43.0
MONOCYTES_76
42.8
MONOCYTES_77
41.8
MONOCYTES_78
41.5
MONOCYTES_79
40.7
MONOCYTES_80
40.4
MONOCYTES_81
40.3
MONOCYTES_82
40.3
MONOCYTES_83
39.7
MONOCYTES_84
39.3
MONOCYTES_85
37.3
MONOCYTES_86
36.9
MONOCYTES_87
36.6
MONOCYTES_88
35.4
MONOCYTES_89
34.0
MONOCYTES_90
33.8
MONOCYTES_91
28.8
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Non-classical monocyte TPM: 203.6
Samples: 90
Max TPM: 363.4
Min TPM: 132.1
M2_1
363.4
M2_2
333.3
M2_3
313.1
M2_4
306.1
M2_5
295.7
M2_6
291.2
M2_7
290.2
M2_8
276.4
M2_9
260.0
M2_10
256.3
M2_11
255.9
M2_12
253.3
M2_13
250.5
M2_14
248.2
M2_15
247.6
M2_16
241.5
M2_17
238.6
M2_18
236.2
M2_19
232.7
M2_20
231.5
M2_21
229.9
M2_22
228.5
M2_23
225.7
M2_24
216.7
M2_25
216.4
M2_26
214.2
M2_27
213.9
M2_28
212.4
M2_29
210.7
M2_30
210.5
M2_31
209.2
M2_32
207.8
M2_33
207.6
M2_34
207.6
M2_35
206.8
M2_36
206.5
M2_37
204.7
M2_38
203.4
M2_39
202.2
M2_40
201.0
M2_41
200.3
M2_42
199.9
M2_43
199.5
M2_44
197.5
M2_45
194.9
M2_46
194.7
M2_47
194.7
M2_48
193.5
M2_49
193.1
M2_50
193.0
M2_51
192.3
M2_52
191.0
M2_53
190.5
M2_54
190.2
M2_55
189.8
M2_56
188.1
M2_57
187.4
M2_58
186.5
M2_59
184.7
M2_60
184.7
M2_61
182.8
M2_62
181.6
M2_63
180.6
M2_64
177.3
M2_65
177.1
M2_66
175.9
M2_67
173.7
M2_68
172.7
M2_69
168.4
M2_70
168.1
M2_71
168.0
M2_72
165.9
M2_73
165.6
M2_74
163.7
M2_75
163.1
M2_76
162.7
M2_77
158.6
M2_78
157.5
M2_79
152.5
M2_80
152.2
M2_81
151.6
M2_82
151.0
M2_83
151.0
M2_84
149.5
M2_85
147.0
M2_86
146.4
M2_87
146.2
M2_88
142.3
M2_89
135.7
M2_90
132.1
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