A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
22.3
nTPM
Schmiedel:
13.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Classical monocyte nTPM: 6.3
Samples: 6
Max nTPM: 11.3
Min nTPM: 2.6
P10809_1003
2.6
P10809_1020
6.8
P10809_1039
11.3
P10809_1058
7.7
P10809_1080
3.7
P10809_1107
5.9
Intermediate monocyte nTPM: 3.1
Samples: 6
Max nTPM: 6.0
Min nTPM: 0.7
P10809_1004
0.7
P10809_1023
4.6
P10809_1042
3.1
P10809_1061
6.0
P10809_1081
1.8
P10809_1108
2.2
Non-classical monocyte nTPM: 4.6
Samples: 5
Max nTPM: 9.0
Min nTPM: 0.5
P10809_1005
0.5
P10809_1053
6.4
P10809_1072
9.0
P10809_1082
2.9
P10809_1109
4.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.3
Monaco sample
nTPM
Classical monocyte nTPM: 22.3
Samples: 4
Max nTPM: 35.2
Min nTPM: 13.6
RHH5313_R3680
35.2
RHH5221_R3593
14.0
RHH5250_R3622
26.5
RHH5279_R3651
13.6
Intermediate monocyte nTPM: 10.5
Samples: 4
Max nTPM: 16.4
Min nTPM: 6.4
RHH5314_R3681
16.4
RHH5222_R3594
6.4
RHH5251_R3623
11.0
RHH5280_R3652
8.1
Non-classical monocyte nTPM: 11.7
Samples: 4
Max nTPM: 18.1
Min nTPM: 5.7
RHH5315_R3682
18.1
RHH5223_R3595
5.7
RHH5252_R3624
14.4
RHH5281_R3653
8.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Schmiedel sample id
TPM
Classical monocyte TPM: 13.5
Samples: 91
Max TPM: 41.3
Min TPM: 3.5
MONOCYTES_1
41.3
MONOCYTES_2
36.1
MONOCYTES_3
34.8
MONOCYTES_4
31.6
MONOCYTES_5
29.7
MONOCYTES_6
29.3
MONOCYTES_7
24.4
MONOCYTES_8
23.6
MONOCYTES_9
22.9
MONOCYTES_10
22.7
MONOCYTES_11
22.7
MONOCYTES_12
22.1
MONOCYTES_13
21.7
MONOCYTES_14
21.6
MONOCYTES_15
19.6
MONOCYTES_16
19.6
MONOCYTES_17
19.6
MONOCYTES_18
19.0
MONOCYTES_19
16.6
MONOCYTES_20
16.3
MONOCYTES_21
16.2
MONOCYTES_22
15.9
MONOCYTES_23
15.8
MONOCYTES_24
15.4
MONOCYTES_25
15.4
MONOCYTES_26
15.3
MONOCYTES_27
15.1
MONOCYTES_28
15.1
MONOCYTES_29
14.9
MONOCYTES_30
14.8
MONOCYTES_31
14.7
MONOCYTES_32
14.5
MONOCYTES_33
14.4
MONOCYTES_34
14.3
MONOCYTES_35
14.3
MONOCYTES_36
13.8
MONOCYTES_37
13.5
MONOCYTES_38
13.4
MONOCYTES_39
13.2
MONOCYTES_40
13.2
MONOCYTES_41
13.2
MONOCYTES_42
12.9
MONOCYTES_43
12.8
MONOCYTES_44
12.7
MONOCYTES_45
12.6
MONOCYTES_46
12.5
MONOCYTES_47
11.8
MONOCYTES_48
11.8
MONOCYTES_49
11.6
MONOCYTES_50
11.4
MONOCYTES_51
11.4
MONOCYTES_52
11.2
MONOCYTES_53
11.1
MONOCYTES_54
11.1
MONOCYTES_55
11.0
MONOCYTES_56
10.8
MONOCYTES_57
10.8
MONOCYTES_58
10.6
MONOCYTES_59
10.5
MONOCYTES_60
10.4
MONOCYTES_61
10.3
MONOCYTES_62
10.1
MONOCYTES_63
10.1
MONOCYTES_64
9.3
MONOCYTES_65
9.3
MONOCYTES_66
9.1
MONOCYTES_67
9.0
MONOCYTES_68
8.9
MONOCYTES_69
8.9
MONOCYTES_70
8.3
MONOCYTES_71
8.2
MONOCYTES_72
7.9
MONOCYTES_73
7.3
MONOCYTES_74
7.0
MONOCYTES_75
6.7
MONOCYTES_76
6.7
MONOCYTES_77
6.6
MONOCYTES_78
6.1
MONOCYTES_79
6.0
MONOCYTES_80
5.7
MONOCYTES_81
5.5
MONOCYTES_82
5.4
MONOCYTES_83
5.2
MONOCYTES_84
4.9
MONOCYTES_85
4.7
MONOCYTES_86
4.5
MONOCYTES_87
4.3
MONOCYTES_88
4.2
MONOCYTES_89
4.1
MONOCYTES_90
3.7
MONOCYTES_91
3.5
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Non-classical monocyte TPM: 10.6
Samples: 90
Max TPM: 36.9
Min TPM: 1.1
M2_1
36.9
M2_2
34.6
M2_3
34.0
M2_4
32.3
M2_5
23.2
M2_6
22.7
M2_7
22.0
M2_8
21.9
M2_9
19.6
M2_10
19.0
M2_11
18.0
M2_12
17.9
M2_13
17.8
M2_14
17.6
M2_15
16.8
M2_16
16.7
M2_17
16.4
M2_18
16.3
M2_19
16.2
M2_20
15.1
M2_21
14.9
M2_22
14.8
M2_23
14.6
M2_24
14.5
M2_25
14.5
M2_26
14.3
M2_27
14.3
M2_28
12.3
M2_29
12.2
M2_30
12.1
M2_31
12.1
M2_32
12.1
M2_33
11.6
M2_34
11.4
M2_35
11.2
M2_36
10.8
M2_37
10.7
M2_38
10.4
M2_39
10.4
M2_40
10.3
M2_41
10.0
M2_42
10.0
M2_43
9.4
M2_44
9.4
M2_45
9.0
M2_46
8.6
M2_47
8.6
M2_48
8.5
M2_49
8.3
M2_50
7.8
M2_51
7.7
M2_52
7.6
M2_53
7.4
M2_54
7.3
M2_55
7.0
M2_56
6.9
M2_57
6.8
M2_58
6.6
M2_59
6.5
M2_60
6.2
M2_61
6.1
M2_62
5.8
M2_63
5.8
M2_64
5.6
M2_65
5.6
M2_66
5.2
M2_67
5.1
M2_68
5.0
M2_69
4.8
M2_70
4.8
M2_71
4.5
M2_72
4.4
M2_73
4.4
M2_74
4.3
M2_75
4.0
M2_76
4.0
M2_77
3.8
M2_78
3.3
M2_79
3.3
M2_80
3.0
M2_81
2.9
M2_82
2.6
M2_83
2.6
M2_84
2.5
M2_85
2.3
M2_86
2.0
M2_87
1.9
M2_88
1.7
M2_89
1.1
M2_90
1.1
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