A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.4
nTPM
Monaco:
39.4
nTPM
Schmiedel:
41.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
HPA sample
nTPM
Memory B-cell nTPM: 21.6
Samples: 6
Max nTPM: 49.9
Min nTPM: 11.5
P10809_1017
11.5
P10809_1025
16.9
P10809_1044
49.9
P10809_1063
21.3
P10809_1092
11.8
P10809_1105
18.4
Naive B-cell nTPM: 23.4
Samples: 6
Max nTPM: 33.0
Min nTPM: 18.0
P10809_1011
19.3
P10809_1029
22.8
P10809_1048
33.0
P10809_1067
26.0
P10809_1091
18.0
P10809_1104
21.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 34.4
Samples: 4
Max nTPM: 41.4
Min nTPM: 28.6
RHH5310_R3677
41.4
RHH5218_R3590
28.6
RHH5247_R3619
36.9
RHH5276_R3648
30.6
Naive B-cell nTPM: 39.1
Samples: 4
Max nTPM: 46.6
Min nTPM: 30.9
RHH5308_R3675
37.4
RHH5216_R3588
30.9
RHH5245_R3617
41.3
RHH5274_R3646
46.6
Non-switched memory B-cell nTPM: 38.3
Samples: 4
Max nTPM: 49.1
Min nTPM: 32.4
RHH5309_R3676
38.4
RHH5217_R3589
32.4
RHH5246_R3618
49.1
RHH5275_R3647
33.2
Plasmablast nTPM: 19.1
Samples: 4
Max nTPM: 26.7
Min nTPM: 10.0
RHH5312_R3679
26.7
RHH5220_R3592
16.4
RHH5249_R3621
23.2
RHH5278_R3650
10.0
Switched memory B-cell nTPM: 39.4
Samples: 4
Max nTPM: 43.3
Min nTPM: 34.2
RHH5311_R3678
43.3
RHH5219_R3591
38.3
RHH5248_R3620
41.7
RHH5277_R3649
34.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.1
Schmiedel sample id
TPM
Naive B-cell TPM: 41.1
Samples: 91
Max TPM: 66.3
Min TPM: 18.5
B_CELL_NAIVE_1
66.3
B_CELL_NAIVE_2
62.8
B_CELL_NAIVE_3
61.7
B_CELL_NAIVE_4
56.6
B_CELL_NAIVE_5
56.4
B_CELL_NAIVE_6
55.0
B_CELL_NAIVE_7
53.8
B_CELL_NAIVE_8
52.9
B_CELL_NAIVE_9
52.9
B_CELL_NAIVE_10
52.8
B_CELL_NAIVE_11
52.3
B_CELL_NAIVE_12
51.9
B_CELL_NAIVE_13
51.8
B_CELL_NAIVE_14
51.8
B_CELL_NAIVE_15
51.0
B_CELL_NAIVE_16
50.7
B_CELL_NAIVE_17
50.7
B_CELL_NAIVE_18
49.7
B_CELL_NAIVE_19
49.5
B_CELL_NAIVE_20
49.4
B_CELL_NAIVE_21
49.0
B_CELL_NAIVE_22
47.8
B_CELL_NAIVE_23
47.7
B_CELL_NAIVE_24
47.6
B_CELL_NAIVE_25
47.6
B_CELL_NAIVE_26
47.6
B_CELL_NAIVE_27
47.5
B_CELL_NAIVE_28
47.2
B_CELL_NAIVE_29
46.6
B_CELL_NAIVE_30
46.0
B_CELL_NAIVE_31
45.9
B_CELL_NAIVE_32
45.3
B_CELL_NAIVE_33
45.1
B_CELL_NAIVE_34
44.8
B_CELL_NAIVE_35
44.5
B_CELL_NAIVE_36
44.1
B_CELL_NAIVE_37
43.9
B_CELL_NAIVE_38
43.6
B_CELL_NAIVE_39
43.1
B_CELL_NAIVE_40
43.0
B_CELL_NAIVE_41
43.0
B_CELL_NAIVE_42
42.2
B_CELL_NAIVE_43
41.8
B_CELL_NAIVE_44
41.8
B_CELL_NAIVE_45
41.4
B_CELL_NAIVE_46
41.4
B_CELL_NAIVE_47
41.4
B_CELL_NAIVE_48
41.0
B_CELL_NAIVE_49
40.8
B_CELL_NAIVE_50
40.4
B_CELL_NAIVE_51
40.4
B_CELL_NAIVE_52
40.2
B_CELL_NAIVE_53
39.8
B_CELL_NAIVE_54
39.8
B_CELL_NAIVE_55
39.6
B_CELL_NAIVE_56
39.4
B_CELL_NAIVE_57
39.2
B_CELL_NAIVE_58
39.0
B_CELL_NAIVE_59
38.1
B_CELL_NAIVE_60
37.5
B_CELL_NAIVE_61
37.5
B_CELL_NAIVE_62
37.5
B_CELL_NAIVE_63
37.5
B_CELL_NAIVE_64
35.3
B_CELL_NAIVE_65
35.3
B_CELL_NAIVE_66
35.0
B_CELL_NAIVE_67
34.4
B_CELL_NAIVE_68
33.6
B_CELL_NAIVE_69
33.6
B_CELL_NAIVE_70
33.1
B_CELL_NAIVE_71
32.6
B_CELL_NAIVE_72
32.6
B_CELL_NAIVE_73
32.4
B_CELL_NAIVE_74
32.4
B_CELL_NAIVE_75
30.7
B_CELL_NAIVE_76
30.0
B_CELL_NAIVE_77
29.9
B_CELL_NAIVE_78
29.8
B_CELL_NAIVE_79
29.2
B_CELL_NAIVE_80
28.8
B_CELL_NAIVE_81
28.5
B_CELL_NAIVE_82
28.4
B_CELL_NAIVE_83
28.1
B_CELL_NAIVE_84
26.8
B_CELL_NAIVE_85
26.6
B_CELL_NAIVE_86
26.1
B_CELL_NAIVE_87
25.7
B_CELL_NAIVE_88
24.5
B_CELL_NAIVE_89
22.4
B_CELL_NAIVE_90
19.6
B_CELL_NAIVE_91
18.5
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