BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.7 nTPM
HPA Brain:98.1 nTPM
GTEx:100.7 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Macaque:125.9 nTPM
Mouse:171.2 nTPM
Rat:106.7 nTPM
Pig:122.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.8
2828 Female, age 72, unknown 112.3
2586 Male, age 75, left hemisphere 110.9
1827 Male, age 72, unknown 100.2
2219 Male, age 76, both hemispheres 98.2
2411 Female, age 72, unknown 84.6
1833 Male, age 53, unknown 83.4
1870 Female, age 42, unknown 78.5
2666 Male, age 74, left hemisphere 77.1
1830 Male, age 51, unknown 76.8
2019 Male, age 18, unknown 76.5
Dorsal raphe nucleus
nTPM: 86.8
2047 Male, age 72, unknown 107.8
2298 Female, age 72, unknown 86.5
1828 Male, age 53, unknown 85.7
2750 Male, age 76, both hemispheres 84.6
2016 Female, age 72, unknown 69.3
Inferior colliculus
nTPM: 83.5
2849 Male, age 72, unknown 108.4
1848 Female, age 42, unknown 83.9
1890 Male, age 53, unknown 74.4
2097 Female, age 72, unknown 67.4
Median raphe nucleus
nTPM: 98.1
2220 Male, age 76, midline 98.1
Periaquaductal grey, anterior
nTPM: 97.8
1795 Male, age 51, unknown 104.8
2502 Female, age 75, unknown 103.3
1947 Male, age 18, unknown 85.4
Periaquaductal grey, dorsal
nTPM: 80.8
1840 Male, age 53, unknown 92.6
2850 Male, age 76, both hemispheres 92.6
2464 Female, age 72, unknown 72.6
1831 Male, age 72, unknown 65.3
Periaquaductal grey, lateral
nTPM: 79.6
2053 Male, age 18, unknown 86.8
2140 Male, age 76, both hemispheres 80.5
2272 Male, age 74, both hemispheres 71.4
Pretectal area
nTPM: 96.6
1816 Male, age 51, unknown 113.6
2007 Male, age 72, unknown 111.2
2667 Female, age 75, unknown 109.2
1944 Female, age 72, unknown 106.1
1817 Female, age 42, unknown 102.2
1815 Male, age 53, unknown 98.2
2825 Male, age 18, unknown 89.3
2224 Female, age 72, unknown 85.2
2316 Male, age 76, right hemisphere 84.6
2273 Male, age 74, both hemispheres 83.7
2407 Male, age 75, both hemispheres 79.6
Red nucleus
nTPM: 78.6
2588 Male, age 74, left hemisphere 88.6
2785 Male, age 18, unknown 83.8
2725 Female, age 75, unknown 83.7
2823 Male, age 76, right hemisphere 82.3
2584 Male, age 75, left hemisphere 81.6
2769 Male, age 72, unknown 81.3
1954 Female, age 42, unknown 78.0
2503 Female, age 72, unknown 74.7
1821 Female, age 72, unknown 74.0
2227 Male, age 72, unknown 73.8
1904 Male, age 53, unknown 72.5
1865 Male, age 51, unknown 68.9
Substantia nigra
nTPM: 95.4
1916 Female, age 42, unknown 153.8
2699 Male, age 18, unknown 113.3
1851 Male, age 51, unknown 105.9
1889 Female, age 72, unknown 105.2
1941 Male, age 53, unknown 88.5
2583 Male, age 75, right hemisphere 88.5
2409 Female, age 72, unknown 87.1
2665 Male, age 74, both hemispheres 78.6
2241 Male, age 72, unknown 69.4
2590 Female, age 75, unknown 63.8
Superior colliculus
nTPM: 89.9
2664 Male, age 75, both hemispheres 116.8
1796 Male, age 53, unknown 112.9
2668 Female, age 75, unknown 99.6
2087 Female, age 72, unknown 97.8
2261 Male, age 18, unknown 88.2
1839 Male, age 51, unknown 85.3
2587 Male, age 74, left hemisphere 80.0
1895 Male, age 76, right hemisphere 79.3
1913 Female, age 42, unknown 71.0
1995 Male, age 72, unknown 68.2
Ventral tegmental area
nTPM: 95.7
1915 Female, age 42, unknown 116.1
2218 Male, age 76, both hemispheres 102.2
2410 Female, age 72, unknown 101.4
1942 Male, age 51, unknown 89.0
2021 Male, age 53, unknown 83.8
2223 Female, age 72, unknown 81.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 100.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.7
Samples: 183

Max nTPM: 245.9
Min nTPM: 35.3
Std nTPM: 37.7
Median nTPM: 93.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 245.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 216.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 210.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 183.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 182.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 182.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 182.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 181.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 178.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 177.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 170.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 125.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 1

Max nTPM: 89.0
Min nTPM: 89.0
Sample A 89.0
Midbrain
nTPM: 95.4
Samples: 1

Max nTPM: 95.4
Min nTPM: 95.4
Sample A 95.4
Superior colliculi
nTPM: 125.9
Samples: 1

Max nTPM: 125.9
Min nTPM: 125.9
Sample A 125.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 122.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.2
Samples: 3

Max nTPM: 145.3
Min nTPM: 80.0
Sample A Female 145.3
Sample B Female 80.0
Sample C Male 141.4
Midbrain
nTPM: 122.4
Samples: 3

Max nTPM: 143.1
Min nTPM: 101.2
Sample B Female 101.2
Sample C Male 143.1
Sample D Male 122.8
Periaqueductal gray
nTPM: 94.4
Samples: 3

Max nTPM: 110.7
Min nTPM: 79.2
Sample B Female 93.3
Sample C Male 110.7
Sample D Male 79.2
Superior colliculi
nTPM: 122.9
Samples: 4

Max nTPM: 149.8
Min nTPM: 72.8
Sample A Female 149.8
Sample B Female 72.8
Sample C Male 148.1
Sample D Male 120.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 171.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.2
Samples: 4

Max nTPM: 174.9
Min nTPM: 165.2
Sample A 165.2
Sample B 174.9
Sample C 172.8
Sample D 171.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 106.7
Rat sample Sample description nTPM
Midbrain
nTPM: 106.7
Samples: 4

Max nTPM: 113.2
Min nTPM: 92.6
Sample A 109.2
Sample A 113.2
Sample A 111.8
Sample A 92.6

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