A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.3
nTPM
Monaco:
34.5
nTPM
Schmiedel:
21.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.3
HPA sample
nTPM
Memory B-cell nTPM: 5.2
Samples: 6
Max nTPM: 12.1
Min nTPM: 3.0
P10809_1017
4.4
P10809_1025
3.2
P10809_1044
12.1
P10809_1063
3.0
P10809_1092
5.7
P10809_1105
3.0
Naive B-cell nTPM: 4.5
Samples: 6
Max nTPM: 8.0
Min nTPM: 1.4
P10809_1011
2.9
P10809_1029
8.0
P10809_1048
1.4
P10809_1067
6.2
P10809_1091
4.9
P10809_1104
3.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.8
Samples: 4
Max nTPM: 29.1
Min nTPM: 16.1
RHH5310_R3677
22.3
RHH5218_R3590
29.1
RHH5247_R3619
27.6
RHH5276_R3648
16.1
Naive B-cell nTPM: 34.5
Samples: 4
Max nTPM: 39.3
Min nTPM: 31.8
RHH5308_R3675
31.8
RHH5216_R3588
39.3
RHH5245_R3617
32.4
RHH5274_R3646
34.5
Non-switched memory B-cell nTPM: 26.3
Samples: 4
Max nTPM: 41.3
Min nTPM: 15.1
RHH5309_R3676
21.6
RHH5217_R3589
41.3
RHH5246_R3618
15.1
RHH5275_R3647
27.1
Plasmablast nTPM: 27.3
Samples: 4
Max nTPM: 32.1
Min nTPM: 22.8
RHH5312_R3679
22.8
RHH5220_R3592
23.7
RHH5249_R3621
30.5
RHH5278_R3650
32.1
Switched memory B-cell nTPM: 27.0
Samples: 4
Max nTPM: 35.3
Min nTPM: 13.8
RHH5311_R3678
27.6
RHH5219_R3591
13.8
RHH5248_R3620
35.3
RHH5277_R3649
31.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
Schmiedel sample id
TPM
Naive B-cell TPM: 21.8
Samples: 91
Max TPM: 36.2
Min TPM: 14.4
B_CELL_NAIVE_1
36.2
B_CELL_NAIVE_2
33.0
B_CELL_NAIVE_3
31.0
B_CELL_NAIVE_4
29.8
B_CELL_NAIVE_5
29.1
B_CELL_NAIVE_6
27.8
B_CELL_NAIVE_7
27.6
B_CELL_NAIVE_8
27.0
B_CELL_NAIVE_9
26.7
B_CELL_NAIVE_10
26.7
B_CELL_NAIVE_11
26.6
B_CELL_NAIVE_12
26.3
B_CELL_NAIVE_13
26.2
B_CELL_NAIVE_14
25.6
B_CELL_NAIVE_15
25.6
B_CELL_NAIVE_16
25.4
B_CELL_NAIVE_17
24.9
B_CELL_NAIVE_18
24.9
B_CELL_NAIVE_19
24.5
B_CELL_NAIVE_20
24.5
B_CELL_NAIVE_21
24.5
B_CELL_NAIVE_22
23.5
B_CELL_NAIVE_23
23.4
B_CELL_NAIVE_24
23.3
B_CELL_NAIVE_25
23.2
B_CELL_NAIVE_26
22.9
B_CELL_NAIVE_27
22.4
B_CELL_NAIVE_28
22.4
B_CELL_NAIVE_29
22.3
B_CELL_NAIVE_30
22.3
B_CELL_NAIVE_31
22.2
B_CELL_NAIVE_32
22.2
B_CELL_NAIVE_33
22.1
B_CELL_NAIVE_34
22.0
B_CELL_NAIVE_35
21.9
B_CELL_NAIVE_36
21.9
B_CELL_NAIVE_37
21.9
B_CELL_NAIVE_38
21.9
B_CELL_NAIVE_39
21.9
B_CELL_NAIVE_40
21.5
B_CELL_NAIVE_41
21.5
B_CELL_NAIVE_42
21.5
B_CELL_NAIVE_43
21.4
B_CELL_NAIVE_44
21.4
B_CELL_NAIVE_45
21.4
B_CELL_NAIVE_46
21.4
B_CELL_NAIVE_47
21.4
B_CELL_NAIVE_48
21.2
B_CELL_NAIVE_49
21.1
B_CELL_NAIVE_50
21.0
B_CELL_NAIVE_51
21.0
B_CELL_NAIVE_52
21.0
B_CELL_NAIVE_53
21.0
B_CELL_NAIVE_54
20.8
B_CELL_NAIVE_55
20.7
B_CELL_NAIVE_56
20.5
B_CELL_NAIVE_57
20.4
B_CELL_NAIVE_58
20.4
B_CELL_NAIVE_59
20.3
B_CELL_NAIVE_60
20.2
B_CELL_NAIVE_61
20.0
B_CELL_NAIVE_62
20.0
B_CELL_NAIVE_63
19.9
B_CELL_NAIVE_64
19.8
B_CELL_NAIVE_65
19.7
B_CELL_NAIVE_66
19.7
B_CELL_NAIVE_67
19.5
B_CELL_NAIVE_68
19.4
B_CELL_NAIVE_69
19.2
B_CELL_NAIVE_70
19.2
B_CELL_NAIVE_71
19.1
B_CELL_NAIVE_72
19.0
B_CELL_NAIVE_73
19.0
B_CELL_NAIVE_74
19.0
B_CELL_NAIVE_75
18.7
B_CELL_NAIVE_76
18.5
B_CELL_NAIVE_77
18.4
B_CELL_NAIVE_78
18.4
B_CELL_NAIVE_79
18.2
B_CELL_NAIVE_80
18.1
B_CELL_NAIVE_81
17.9
B_CELL_NAIVE_82
17.8
B_CELL_NAIVE_83
17.2
B_CELL_NAIVE_84
17.1
B_CELL_NAIVE_85
16.5
B_CELL_NAIVE_86
16.4
B_CELL_NAIVE_87
16.0
B_CELL_NAIVE_88
15.8
B_CELL_NAIVE_89
15.2
B_CELL_NAIVE_90
14.5
B_CELL_NAIVE_91
14.4
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