A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
466.2
nTPM
Monaco:
169.9
nTPM
Schmiedel:
119.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
466.2
HPA sample
nTPM
Classical monocyte nTPM: 466.3
Samples: 6
Max nTPM: 583.0
Min nTPM: 343.7
P10809_1003
475.2
P10809_1020
474.5
P10809_1039
583.0
P10809_1058
343.7
P10809_1080
407.6
P10809_1107
513.5
Intermediate monocyte nTPM: 221.2
Samples: 6
Max nTPM: 305.1
Min nTPM: 128.0
P10809_1004
128.0
P10809_1023
275.8
P10809_1042
226.4
P10809_1061
164.3
P10809_1081
227.5
P10809_1108
305.1
Non-classical monocyte nTPM: 118.2
Samples: 5
Max nTPM: 180.8
Min nTPM: 84.7
P10809_1005
105.3
P10809_1053
129.6
P10809_1072
84.7
P10809_1082
90.4
P10809_1109
180.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
169.9
Monaco sample
nTPM
Classical monocyte nTPM: 169.9
Samples: 4
Max nTPM: 228.1
Min nTPM: 124.9
RHH5313_R3680
228.1
RHH5221_R3593
124.9
RHH5250_R3622
169.2
RHH5279_R3651
157.4
Intermediate monocyte nTPM: 94.1
Samples: 4
Max nTPM: 150.5
Min nTPM: 71.5
RHH5314_R3681
150.5
RHH5222_R3594
81.7
RHH5251_R3623
71.5
RHH5280_R3652
72.8
Non-classical monocyte nTPM: 57.0
Samples: 4
Max nTPM: 79.8
Min nTPM: 31.0
RHH5315_R3682
79.8
RHH5223_R3595
63.4
RHH5252_R3624
31.0
RHH5281_R3653
53.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
119.6
Schmiedel sample id
TPM
Classical monocyte TPM: 119.6
Samples: 91
Max TPM: 204.2
Min TPM: 40.0
MONOCYTES_1
204.2
MONOCYTES_2
195.4
MONOCYTES_3
193.3
MONOCYTES_4
193.1
MONOCYTES_5
182.6
MONOCYTES_6
182.2
MONOCYTES_7
181.0
MONOCYTES_8
180.6
MONOCYTES_9
180.1
MONOCYTES_10
177.5
MONOCYTES_11
172.9
MONOCYTES_12
172.3
MONOCYTES_13
170.1
MONOCYTES_14
169.5
MONOCYTES_15
168.7
MONOCYTES_16
168.3
MONOCYTES_17
166.6
MONOCYTES_18
166.0
MONOCYTES_19
164.7
MONOCYTES_20
163.4
MONOCYTES_21
161.2
MONOCYTES_22
160.9
MONOCYTES_23
160.1
MONOCYTES_24
158.6
MONOCYTES_25
157.4
MONOCYTES_26
155.8
MONOCYTES_27
153.7
MONOCYTES_28
149.1
MONOCYTES_29
148.8
MONOCYTES_30
146.6
MONOCYTES_31
142.0
MONOCYTES_32
138.2
MONOCYTES_33
137.2
MONOCYTES_34
132.6
MONOCYTES_35
131.2
MONOCYTES_36
130.8
MONOCYTES_37
120.7
MONOCYTES_38
117.6
MONOCYTES_39
117.5
MONOCYTES_40
116.7
MONOCYTES_41
115.6
MONOCYTES_42
115.4
MONOCYTES_43
114.3
MONOCYTES_44
114.3
MONOCYTES_45
113.8
MONOCYTES_46
113.0
MONOCYTES_47
111.9
MONOCYTES_48
110.6
MONOCYTES_49
110.3
MONOCYTES_50
110.0
MONOCYTES_51
108.3
MONOCYTES_52
108.2
MONOCYTES_53
106.7
MONOCYTES_54
103.9
MONOCYTES_55
101.7
MONOCYTES_56
101.5
MONOCYTES_57
100.5
MONOCYTES_58
100.5
MONOCYTES_59
98.6
MONOCYTES_60
97.9
MONOCYTES_61
97.3
MONOCYTES_62
95.9
MONOCYTES_63
95.8
MONOCYTES_64
94.9
MONOCYTES_65
93.8
MONOCYTES_66
92.6
MONOCYTES_67
88.9
MONOCYTES_68
88.5
MONOCYTES_69
87.9
MONOCYTES_70
87.0
MONOCYTES_71
85.4
MONOCYTES_72
84.7
MONOCYTES_73
84.5
MONOCYTES_74
82.5
MONOCYTES_75
81.0
MONOCYTES_76
77.2
MONOCYTES_77
74.2
MONOCYTES_78
74.0
MONOCYTES_79
72.5
MONOCYTES_80
71.1
MONOCYTES_81
68.8
MONOCYTES_82
64.3
MONOCYTES_83
62.5
MONOCYTES_84
61.7
MONOCYTES_85
59.3
MONOCYTES_86
58.8
MONOCYTES_87
57.7
MONOCYTES_88
54.5
MONOCYTES_89
51.3
MONOCYTES_90
45.4
MONOCYTES_91
40.0
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Non-classical monocyte TPM: 26.9
Samples: 90
Max TPM: 68.2
Min TPM: 3.6
M2_1
68.2
M2_2
58.9
M2_3
54.9
M2_4
54.8
M2_5
53.4
M2_6
48.2
M2_7
45.6
M2_8
44.5
M2_9
44.3
M2_10
43.8
M2_11
42.5
M2_12
41.8
M2_13
41.3
M2_14
41.1
M2_15
40.9
M2_16
40.7
M2_17
39.9
M2_18
39.6
M2_19
38.8
M2_20
38.3
M2_21
37.7
M2_22
35.8
M2_23
34.8
M2_24
33.3
M2_25
33.1
M2_26
33.0
M2_27
32.8
M2_28
32.7
M2_29
32.4
M2_30
31.6
M2_31
31.1
M2_32
30.5
M2_33
30.3
M2_34
29.2
M2_35
29.2
M2_36
28.7
M2_37
28.1
M2_38
27.9
M2_39
27.8
M2_40
27.2
M2_41
25.6
M2_42
25.5
M2_43
25.4
M2_44
25.3
M2_45
25.2
M2_46
24.6
M2_47
24.1
M2_48
23.9
M2_49
23.5
M2_50
23.4
M2_51
23.3
M2_52
22.9
M2_53
22.3
M2_54
22.0
M2_55
22.0
M2_56
22.0
M2_57
21.9
M2_58
21.8
M2_59
21.7
M2_60
21.5
M2_61
21.5
M2_62
21.0
M2_63
20.2
M2_64
17.9
M2_65
17.7
M2_66
17.6
M2_67
17.6
M2_68
17.5
M2_69
17.3
M2_70
17.0
M2_71
16.5
M2_72
16.2
M2_73
15.8
M2_74
15.5
M2_75
14.9
M2_76
14.9
M2_77
13.4
M2_78
12.9
M2_79
12.4
M2_80
11.7
M2_81
10.9
M2_82
10.2
M2_83
10.1
M2_84
9.2
M2_85
9.0
M2_86
7.6
M2_87
6.6
M2_88
6.5
M2_89
5.5
M2_90
3.6
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