A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.7
nTPM
Monaco:
131.0
nTPM
Schmiedel:
55.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
HPA sample
nTPM
Classical monocyte nTPM: 31.3
Samples: 6
Max nTPM: 33.1
Min nTPM: 29.5
P10809_1003
32.3
P10809_1020
32.1
P10809_1039
30.4
P10809_1058
29.5
P10809_1080
33.1
P10809_1107
30.3
Intermediate monocyte nTPM: 35.5
Samples: 6
Max nTPM: 43.7
Min nTPM: 27.3
P10809_1004
35.1
P10809_1023
34.6
P10809_1042
43.7
P10809_1061
27.3
P10809_1081
33.6
P10809_1108
38.9
Non-classical monocyte nTPM: 37.7
Samples: 5
Max nTPM: 47.1
Min nTPM: 29.2
P10809_1005
36.3
P10809_1053
29.2
P10809_1072
47.1
P10809_1082
36.8
P10809_1109
38.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.0
Monaco sample
nTPM
Classical monocyte nTPM: 131.0
Samples: 4
Max nTPM: 163.2
Min nTPM: 109.7
RHH5313_R3680
122.3
RHH5221_R3593
163.2
RHH5250_R3622
128.9
RHH5279_R3651
109.7
Intermediate monocyte nTPM: 112.2
Samples: 4
Max nTPM: 128.1
Min nTPM: 99.2
RHH5314_R3681
99.9
RHH5222_R3594
128.1
RHH5251_R3623
99.2
RHH5280_R3652
121.7
Non-classical monocyte nTPM: 128.6
Samples: 4
Max nTPM: 151.0
Min nTPM: 104.6
RHH5315_R3682
104.6
RHH5223_R3595
151.0
RHH5252_R3624
133.1
RHH5281_R3653
125.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.8
Schmiedel sample id
TPM
Classical monocyte TPM: 42.2
Samples: 91
Max TPM: 55.6
Min TPM: 30.6
MONOCYTES_1
55.6
MONOCYTES_2
53.9
MONOCYTES_3
53.7
MONOCYTES_4
52.3
MONOCYTES_5
51.6
MONOCYTES_6
50.0
MONOCYTES_7
50.0
MONOCYTES_8
49.1
MONOCYTES_9
48.7
MONOCYTES_10
48.5
MONOCYTES_11
48.0
MONOCYTES_12
47.5
MONOCYTES_13
46.9
MONOCYTES_14
46.9
MONOCYTES_15
46.9
MONOCYTES_16
46.8
MONOCYTES_17
46.7
MONOCYTES_18
46.1
MONOCYTES_19
45.7
MONOCYTES_20
45.7
MONOCYTES_21
45.6
MONOCYTES_22
45.5
MONOCYTES_23
45.2
MONOCYTES_24
45.1
MONOCYTES_25
45.1
MONOCYTES_26
45.1
MONOCYTES_27
44.9
MONOCYTES_28
44.8
MONOCYTES_29
44.5
MONOCYTES_30
44.5
MONOCYTES_31
44.4
MONOCYTES_32
44.4
MONOCYTES_33
44.1
MONOCYTES_34
44.0
MONOCYTES_35
43.9
MONOCYTES_36
43.9
MONOCYTES_37
43.7
MONOCYTES_38
43.7
MONOCYTES_39
42.9
MONOCYTES_40
42.8
MONOCYTES_41
42.8
MONOCYTES_42
42.8
MONOCYTES_43
42.6
MONOCYTES_44
42.2
MONOCYTES_45
42.2
MONOCYTES_46
42.1
MONOCYTES_47
41.8
MONOCYTES_48
41.8
MONOCYTES_49
41.6
MONOCYTES_50
41.6
MONOCYTES_51
41.5
MONOCYTES_52
41.4
MONOCYTES_53
41.3
MONOCYTES_54
41.0
MONOCYTES_55
40.9
MONOCYTES_56
40.8
MONOCYTES_57
40.7
MONOCYTES_58
40.4
MONOCYTES_59
40.3
MONOCYTES_60
40.3
MONOCYTES_61
39.9
MONOCYTES_62
39.5
MONOCYTES_63
39.3
MONOCYTES_64
39.3
MONOCYTES_65
39.2
MONOCYTES_66
39.1
MONOCYTES_67
39.0
MONOCYTES_68
38.8
MONOCYTES_69
38.8
MONOCYTES_70
38.6
MONOCYTES_71
38.3
MONOCYTES_72
38.2
MONOCYTES_73
37.8
MONOCYTES_74
37.7
MONOCYTES_75
37.4
MONOCYTES_76
37.1
MONOCYTES_77
36.8
MONOCYTES_78
36.5
MONOCYTES_79
36.3
MONOCYTES_80
36.3
MONOCYTES_81
36.0
MONOCYTES_82
34.9
MONOCYTES_83
34.9
MONOCYTES_84
34.9
MONOCYTES_85
34.9
MONOCYTES_86
34.8
MONOCYTES_87
34.7
MONOCYTES_88
34.6
MONOCYTES_89
34.5
MONOCYTES_90
33.9
MONOCYTES_91
30.6
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Non-classical monocyte TPM: 55.8
Samples: 90
Max TPM: 69.9
Min TPM: 44.1
M2_1
69.9
M2_2
69.4
M2_3
68.5
M2_4
66.6
M2_5
65.7
M2_6
65.1
M2_7
64.8
M2_8
64.3
M2_9
63.8
M2_10
63.3
M2_11
62.6
M2_12
62.1
M2_13
61.9
M2_14
61.9
M2_15
61.7
M2_16
61.1
M2_17
60.5
M2_18
60.2
M2_19
60.2
M2_20
59.8
M2_21
59.4
M2_22
59.3
M2_23
59.3
M2_24
59.3
M2_25
59.3
M2_26
59.2
M2_27
59.0
M2_28
58.9
M2_29
58.4
M2_30
58.1
M2_31
58.0
M2_32
57.4
M2_33
57.2
M2_34
57.1
M2_35
57.0
M2_36
56.7
M2_37
56.7
M2_38
56.6
M2_39
56.2
M2_40
55.8
M2_41
55.7
M2_42
55.7
M2_43
55.5
M2_44
55.4
M2_45
55.1
M2_46
55.0
M2_47
55.0
M2_48
54.8
M2_49
54.7
M2_50
54.6
M2_51
54.5
M2_52
54.3
M2_53
54.2
M2_54
54.0
M2_55
53.9
M2_56
53.9
M2_57
53.8
M2_58
53.7
M2_59
53.6
M2_60
53.5
M2_61
53.5
M2_62
53.4
M2_63
53.2
M2_64
53.2
M2_65
53.1
M2_66
52.5
M2_67
52.3
M2_68
52.1
M2_69
51.4
M2_70
51.4
M2_71
51.3
M2_72
51.3
M2_73
50.9
M2_74
50.8
M2_75
50.5
M2_76
50.4
M2_77
50.1
M2_78
49.9
M2_79
49.7
M2_80
49.4
M2_81
48.9
M2_82
48.3
M2_83
48.2
M2_84
48.1
M2_85
47.4
M2_86
47.2
M2_87
46.4
M2_88
45.8
M2_89
45.8
M2_90
44.1
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