NUDC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • NUDC
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:112.7 nTPM
HPA Brain:65.8 nTPM
GTEx:112.7 nTPM
FANTOM5:241.6 Scaled Tags Per Million
Macaque:46.9 nTPM
Mouse:127.8 nTPM
Rat:53.5 nTPM
Pig:42.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.8
Sample id Sample description nTPM
Basal amygdala
nTPM: 65.8
2243 Female, age 91, right hemisphere 68.4
2827 Female, age 67, right hemisphere 68.0
2609 Male, age 75, right hemisphere 67.4
2685 Female, age 94, left hemisphere 66.0
2110 Male, age 80, left hemisphere 65.3
1955 Male, age 76, both hemispheres 60.0
Central amygdala
nTPM: 62.4
2826 Female, age 94, left hemisphere 75.7
2239 Male, age 80, left hemisphere 63.0
2701 Female, age 91, right hemisphere 62.9
2515 Male, age 75, right hemisphere 56.0
1905 Male, age 76, both hemispheres 54.5
Corticomedial amygdala
nTPM: 65.0
2535 Female, age 67, right hemisphere 77.5
2829 Male, age 80, left hemisphere 68.0
2240 Male, age 76, both hemispheres 62.8
2242 Female, age 91, right hemisphere 62.6
2429 Female, age 94, left hemisphere 62.0
2428 Male, age 75, right hemisphere 57.4
Lateral amygdala
nTPM: 60.7
2534 Female, age 94, left hemisphere 69.6
2516 Male, age 75, right hemisphere 67.0
2830 Female, age 67, right hemisphere 61.0
2256 Male, age 80, left hemisphere 56.4
1883 Male, age 76, both hemispheres 56.0
2255 Female, age 91, right hemisphere 54.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.7
Samples: 181

Max nTPM: 243.1
Min nTPM: 63.2
Std nTPM: 30.0
Median nTPM: 105.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 243.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 215.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 211.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 194.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 191.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 184.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 184.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 183.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 173.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 172.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 169.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 168.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 166.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 163.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 158.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 157.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 151.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 150.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 150.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 146.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 145.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 145.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 145.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 142.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 142.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 141.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 138.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 137.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 136.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 136.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 135.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 135.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 133.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 133.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 131.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 130.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 129.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 129.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 128.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 126.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 126.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 125.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 124.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 124.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 123.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 122.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 122.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 121.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 121.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 119.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 119.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 118.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 118.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 117.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 117.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 117.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 117.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 116.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 116.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 115.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 113.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 113.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 112.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 111.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 111.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 110.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 109.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 108.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 107.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 107.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 107.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 106.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 106.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 105.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 105.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 105.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 105.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 105.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 105.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 104.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 104.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 104.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 103.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 103.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 103.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 103.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 101.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 101.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 101.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 101.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 101.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 100.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 98.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 98.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 98.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 97.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 97.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 96.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 94.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 94.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 94.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 93.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 92.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 91.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 91.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 91.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 91.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 90.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 89.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 89.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 88.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 87.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 87.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 87.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 85.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 83.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 81.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 81.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 80.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 80.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 80.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 80.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 80.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 79.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 78.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 77.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 77.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 73.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 72.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 71.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 70.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 63.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.6
FF:10151-102I7 76 years, female 241.6

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.9
Macaque sample Sample description nTPM
Amygdala
nTPM: 47.0
Samples: 2

Max nTPM: 51.7
Min nTPM: 42.2
Sample A 42.2
Sample B 51.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.6
Pig sample Sample description nTPM
Amygdala
nTPM: 42.6
Samples: 4

Max nTPM: 55.0
Min nTPM: 37.6
Sample A Female 55.0
Sample B Female 38.5
Sample C Male 37.6
Sample D Male 39.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 127.8
Samples: 4

Max nTPM: 136.2
Min nTPM: 118.2
Sample A 126.5
Sample B 118.2
Sample C 136.2
Sample D 130.4

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.5
Rat sample Sample description nTPM
Amygdala
nTPM: 53.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 49.8
Sample A 53.6
Sample A 56.5
Sample A 54.1
Sample A 49.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.