A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.3
nTPM
Monaco:
494.4
nTPM
Schmiedel:
106.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.3
HPA sample
nTPM
Classical monocyte nTPM: 28.3
Samples: 6
Max nTPM: 63.5
Min nTPM: 15.0
P10809_1003
63.5
P10809_1020
27.3
P10809_1039
15.0
P10809_1058
17.5
P10809_1080
25.7
P10809_1107
20.8
Intermediate monocyte nTPM: 25.8
Samples: 6
Max nTPM: 38.6
Min nTPM: 20.3
P10809_1004
38.6
P10809_1023
20.3
P10809_1042
22.1
P10809_1061
26.7
P10809_1081
23.2
P10809_1108
24.1
Non-classical monocyte nTPM: 17.1
Samples: 5
Max nTPM: 33.0
Min nTPM: 6.6
P10809_1005
22.2
P10809_1053
6.6
P10809_1072
33.0
P10809_1082
11.0
P10809_1109
12.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
494.4
Monaco sample
nTPM
Classical monocyte nTPM: 494.4
Samples: 4
Max nTPM: 1077.7
Min nTPM: 180.3
RHH5313_R3680
188.8
RHH5221_R3593
1077.7
RHH5250_R3622
530.7
RHH5279_R3651
180.3
Intermediate monocyte nTPM: 413.9
Samples: 4
Max nTPM: 977.0
Min nTPM: 125.0
RHH5314_R3681
152.4
RHH5222_R3594
977.0
RHH5251_R3623
401.1
RHH5280_R3652
125.0
Non-classical monocyte nTPM: 333.6
Samples: 4
Max nTPM: 849.1
Min nTPM: 89.5
RHH5315_R3682
95.5
RHH5223_R3595
849.1
RHH5252_R3624
300.1
RHH5281_R3653
89.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.4
Schmiedel sample id
TPM
Classical monocyte TPM: 106.4
Samples: 91
Max TPM: 299.8
Min TPM: 60.4
MONOCYTES_1
299.8
MONOCYTES_2
208.9
MONOCYTES_3
157.4
MONOCYTES_4
150.6
MONOCYTES_5
150.4
MONOCYTES_6
148.4
MONOCYTES_7
147.3
MONOCYTES_8
143.5
MONOCYTES_9
138.4
MONOCYTES_10
138.4
MONOCYTES_11
135.5
MONOCYTES_12
133.2
MONOCYTES_13
131.0
MONOCYTES_14
129.6
MONOCYTES_15
128.7
MONOCYTES_16
127.8
MONOCYTES_17
127.0
MONOCYTES_18
126.5
MONOCYTES_19
126.1
MONOCYTES_20
124.6
MONOCYTES_21
123.6
MONOCYTES_22
123.6
MONOCYTES_23
123.0
MONOCYTES_24
121.9
MONOCYTES_25
121.6
MONOCYTES_26
120.4
MONOCYTES_27
119.7
MONOCYTES_28
119.6
MONOCYTES_29
119.3
MONOCYTES_30
117.3
MONOCYTES_31
115.1
MONOCYTES_32
113.1
MONOCYTES_33
113.1
MONOCYTES_34
112.7
MONOCYTES_35
111.6
MONOCYTES_36
110.8
MONOCYTES_37
110.7
MONOCYTES_38
110.4
MONOCYTES_39
110.0
MONOCYTES_40
109.6
MONOCYTES_41
106.9
MONOCYTES_42
105.9
MONOCYTES_43
105.5
MONOCYTES_44
104.9
MONOCYTES_45
104.5
MONOCYTES_46
104.0
MONOCYTES_47
103.4
MONOCYTES_48
102.8
MONOCYTES_49
101.2
MONOCYTES_50
100.7
MONOCYTES_51
99.5
MONOCYTES_52
98.0
MONOCYTES_53
96.3
MONOCYTES_54
96.0
MONOCYTES_55
94.3
MONOCYTES_56
92.9
MONOCYTES_57
92.7
MONOCYTES_58
92.7
MONOCYTES_59
92.7
MONOCYTES_60
92.4
MONOCYTES_61
91.9
MONOCYTES_62
90.6
MONOCYTES_63
90.2
MONOCYTES_64
89.2
MONOCYTES_65
87.7
MONOCYTES_66
87.0
MONOCYTES_67
87.0
MONOCYTES_68
84.6
MONOCYTES_69
83.6
MONOCYTES_70
83.0
MONOCYTES_71
81.6
MONOCYTES_72
81.5
MONOCYTES_73
81.4
MONOCYTES_74
80.0
MONOCYTES_75
78.0
MONOCYTES_76
77.8
MONOCYTES_77
76.7
MONOCYTES_78
76.5
MONOCYTES_79
75.7
MONOCYTES_80
73.6
MONOCYTES_81
72.9
MONOCYTES_82
71.7
MONOCYTES_83
71.5
MONOCYTES_84
71.2
MONOCYTES_85
69.8
MONOCYTES_86
69.3
MONOCYTES_87
63.8
MONOCYTES_88
63.6
MONOCYTES_89
63.4
MONOCYTES_90
63.4
MONOCYTES_91
60.4
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Non-classical monocyte TPM: 30.5
Samples: 90
Max TPM: 111.4
Min TPM: 11.6
M2_1
111.4
M2_2
74.6
M2_3
67.3
M2_4
52.2
M2_5
50.5
M2_6
50.1
M2_7
48.0
M2_8
47.4
M2_9
44.0
M2_10
43.9
M2_11
42.6
M2_12
41.8
M2_13
41.5
M2_14
40.5
M2_15
40.3
M2_16
40.1
M2_17
39.0
M2_18
38.5
M2_19
37.7
M2_20
37.4
M2_21
37.2
M2_22
36.9
M2_23
36.4
M2_24
36.3
M2_25
35.9
M2_26
35.1
M2_27
34.7
M2_28
33.9
M2_29
33.5
M2_30
33.0
M2_31
32.9
M2_32
31.0
M2_33
30.5
M2_34
30.3
M2_35
30.0
M2_36
29.7
M2_37
29.7
M2_38
28.6
M2_39
28.2
M2_40
27.9
M2_41
27.8
M2_42
27.2
M2_43
27.2
M2_44
27.0
M2_45
26.9
M2_46
26.6
M2_47
26.4
M2_48
26.3
M2_49
26.1
M2_50
25.6
M2_51
25.5
M2_52
25.4
M2_53
25.0
M2_54
25.0
M2_55
25.0
M2_56
25.0
M2_57
24.1
M2_58
23.9
M2_59
23.8
M2_60
23.2
M2_61
23.2
M2_62
22.9
M2_63
22.9
M2_64
22.6
M2_65
22.1
M2_66
21.9
M2_67
21.8
M2_68
21.7
M2_69
21.5
M2_70
21.4
M2_71
21.4
M2_72
21.4
M2_73
21.1
M2_74
20.8
M2_75
20.6
M2_76
20.6
M2_77
20.0
M2_78
19.9
M2_79
19.6
M2_80
19.5
M2_81
19.1
M2_82
18.7
M2_83
18.0
M2_84
17.7
M2_85
17.4
M2_86
17.1
M2_87
16.5
M2_88
14.1
M2_89
11.7
M2_90
11.6
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