A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.1
nTPM
Monaco:
51.4
nTPM
Schmiedel:
39.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.1
HPA sample
nTPM
Classical monocyte nTPM: 6.0
Samples: 6
Max nTPM: 8.4
Min nTPM: 2.3
P10809_1003
8.4
P10809_1020
6.1
P10809_1039
2.3
P10809_1058
4.7
P10809_1080
7.8
P10809_1107
6.4
Intermediate monocyte nTPM: 9.1
Samples: 6
Max nTPM: 13.3
Min nTPM: 3.7
P10809_1004
9.5
P10809_1023
13.3
P10809_1042
11.0
P10809_1061
9.9
P10809_1081
7.0
P10809_1108
3.7
Non-classical monocyte nTPM: 5.7
Samples: 5
Max nTPM: 10.0
Min nTPM: 3.2
P10809_1005
10.0
P10809_1053
4.6
P10809_1072
3.2
P10809_1082
6.3
P10809_1109
4.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.4
Monaco sample
nTPM
Classical monocyte nTPM: 37.0
Samples: 4
Max nTPM: 39.1
Min nTPM: 35.2
RHH5313_R3680
39.1
RHH5221_R3593
37.1
RHH5250_R3622
36.7
RHH5279_R3651
35.2
Intermediate monocyte nTPM: 51.5
Samples: 4
Max nTPM: 65.4
Min nTPM: 32.7
RHH5314_R3681
50.8
RHH5222_R3594
65.4
RHH5251_R3623
56.9
RHH5280_R3652
32.7
Non-classical monocyte nTPM: 43.2
Samples: 4
Max nTPM: 52.1
Min nTPM: 35.8
RHH5315_R3682
45.4
RHH5223_R3595
39.4
RHH5252_R3624
52.1
RHH5281_R3653
35.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.9
Schmiedel sample id
TPM
Classical monocyte TPM: 39.7
Samples: 91
Max TPM: 58.7
Min TPM: 20.8
MONOCYTES_1
58.7
MONOCYTES_2
55.7
MONOCYTES_3
55.6
MONOCYTES_4
55.1
MONOCYTES_5
55.1
MONOCYTES_6
55.1
MONOCYTES_7
54.7
MONOCYTES_8
54.6
MONOCYTES_9
54.4
MONOCYTES_10
54.0
MONOCYTES_11
53.9
MONOCYTES_12
53.3
MONOCYTES_13
53.2
MONOCYTES_14
52.9
MONOCYTES_15
52.0
MONOCYTES_16
51.0
MONOCYTES_17
50.6
MONOCYTES_18
50.6
MONOCYTES_19
50.2
MONOCYTES_20
49.7
MONOCYTES_21
49.5
MONOCYTES_22
49.4
MONOCYTES_23
49.3
MONOCYTES_24
49.2
MONOCYTES_25
49.2
MONOCYTES_26
48.4
MONOCYTES_27
48.3
MONOCYTES_28
48.3
MONOCYTES_29
48.3
MONOCYTES_30
47.8
MONOCYTES_31
47.4
MONOCYTES_32
46.9
MONOCYTES_33
46.9
MONOCYTES_34
46.1
MONOCYTES_35
45.5
MONOCYTES_36
44.0
MONOCYTES_37
43.1
MONOCYTES_38
42.7
MONOCYTES_39
41.5
MONOCYTES_40
41.4
MONOCYTES_41
40.9
MONOCYTES_42
40.6
MONOCYTES_43
39.9
MONOCYTES_44
39.5
MONOCYTES_45
39.5
MONOCYTES_46
39.0
MONOCYTES_47
38.9
MONOCYTES_48
38.6
MONOCYTES_49
38.1
MONOCYTES_50
37.8
MONOCYTES_51
37.5
MONOCYTES_52
37.3
MONOCYTES_53
37.0
MONOCYTES_54
36.4
MONOCYTES_55
36.1
MONOCYTES_56
36.0
MONOCYTES_57
35.7
MONOCYTES_58
35.3
MONOCYTES_59
33.3
MONOCYTES_60
33.0
MONOCYTES_61
33.0
MONOCYTES_62
32.7
MONOCYTES_63
32.6
MONOCYTES_64
32.0
MONOCYTES_65
31.5
MONOCYTES_66
31.4
MONOCYTES_67
31.4
MONOCYTES_68
31.0
MONOCYTES_69
30.1
MONOCYTES_70
30.1
MONOCYTES_71
30.1
MONOCYTES_72
29.3
MONOCYTES_73
29.2
MONOCYTES_74
28.9
MONOCYTES_75
28.8
MONOCYTES_76
27.9
MONOCYTES_77
27.3
MONOCYTES_78
27.2
MONOCYTES_79
26.9
MONOCYTES_80
26.5
MONOCYTES_81
25.7
MONOCYTES_82
25.5
MONOCYTES_83
24.8
MONOCYTES_84
24.0
MONOCYTES_85
23.8
MONOCYTES_86
23.7
MONOCYTES_87
23.6
MONOCYTES_88
22.9
MONOCYTES_89
22.0
MONOCYTES_90
21.2
MONOCYTES_91
20.8
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Non-classical monocyte TPM: 39.9
Samples: 90
Max TPM: 66.5
Min TPM: 12.8
M2_1
66.5
M2_2
64.2
M2_3
63.8
M2_4
61.9
M2_5
61.7
M2_6
58.6
M2_7
58.1
M2_8
57.5
M2_9
57.2
M2_10
56.5
M2_11
56.3
M2_12
56.2
M2_13
55.9
M2_14
55.5
M2_15
55.4
M2_16
54.2
M2_17
51.8
M2_18
51.7
M2_19
51.4
M2_20
51.1
M2_21
50.5
M2_22
48.9
M2_23
48.5
M2_24
48.4
M2_25
48.2
M2_26
47.9
M2_27
47.1
M2_28
47.0
M2_29
46.9
M2_30
46.8
M2_31
46.6
M2_32
46.2
M2_33
45.9
M2_34
45.7
M2_35
45.2
M2_36
45.2
M2_37
44.6
M2_38
44.6
M2_39
44.6
M2_40
44.3
M2_41
43.6
M2_42
43.4
M2_43
42.9
M2_44
42.8
M2_45
42.0
M2_46
41.2
M2_47
40.4
M2_48
40.0
M2_49
38.7
M2_50
38.3
M2_51
37.1
M2_52
36.8
M2_53
36.7
M2_54
36.7
M2_55
36.4
M2_56
35.7
M2_57
35.6
M2_58
35.4
M2_59
35.0
M2_60
34.8
M2_61
34.4
M2_62
34.0
M2_63
33.8
M2_64
32.2
M2_65
31.3
M2_66
30.7
M2_67
30.1
M2_68
29.3
M2_69
28.4
M2_70
28.0
M2_71
27.1
M2_72
26.6
M2_73
26.3
M2_74
26.2
M2_75
25.2
M2_76
25.0
M2_77
24.5
M2_78
22.7
M2_79
22.6
M2_80
21.3
M2_81
21.2
M2_82
21.0
M2_83
20.7
M2_84
19.8
M2_85
19.0
M2_86
19.0
M2_87
16.8
M2_88
15.3
M2_89
14.0
M2_90
12.8
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