A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.9
nTPM
Monaco:
109.3
nTPM
Schmiedel:
34.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.9
HPA sample
nTPM
Classical monocyte nTPM: 37.4
Samples: 6
Max nTPM: 47.1
Min nTPM: 26.7
P10809_1003
40.0
P10809_1020
47.1
P10809_1039
38.7
P10809_1058
29.0
P10809_1080
26.7
P10809_1107
42.6
Intermediate monocyte nTPM: 45.9
Samples: 6
Max nTPM: 69.9
Min nTPM: 22.7
P10809_1004
40.2
P10809_1023
56.7
P10809_1042
48.5
P10809_1061
37.1
P10809_1081
22.7
P10809_1108
69.9
Non-classical monocyte nTPM: 35.6
Samples: 5
Max nTPM: 48.0
Min nTPM: 26.9
P10809_1005
35.1
P10809_1053
28.9
P10809_1072
48.0
P10809_1082
26.9
P10809_1109
39.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.3
Monaco sample
nTPM
Classical monocyte nTPM: 109.4
Samples: 4
Max nTPM: 123.1
Min nTPM: 91.9
RHH5313_R3680
91.9
RHH5221_R3593
112.9
RHH5250_R3622
123.1
RHH5279_R3651
109.5
Intermediate monocyte nTPM: 81.7
Samples: 4
Max nTPM: 98.0
Min nTPM: 69.7
RHH5314_R3681
98.0
RHH5222_R3594
69.7
RHH5251_R3623
77.0
RHH5280_R3652
81.9
Non-classical monocyte nTPM: 64.1
Samples: 4
Max nTPM: 84.1
Min nTPM: 53.6
RHH5315_R3682
63.2
RHH5223_R3595
53.6
RHH5252_R3624
84.1
RHH5281_R3653
55.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Schmiedel sample id
TPM
Classical monocyte TPM: 34.9
Samples: 91
Max TPM: 48.2
Min TPM: 27.8
MONOCYTES_1
48.2
MONOCYTES_2
47.3
MONOCYTES_3
45.8
MONOCYTES_4
44.8
MONOCYTES_5
44.7
MONOCYTES_6
43.2
MONOCYTES_7
43.0
MONOCYTES_8
42.2
MONOCYTES_9
40.7
MONOCYTES_10
40.6
MONOCYTES_11
40.5
MONOCYTES_12
40.3
MONOCYTES_13
39.9
MONOCYTES_14
39.7
MONOCYTES_15
39.3
MONOCYTES_16
39.2
MONOCYTES_17
39.0
MONOCYTES_18
38.4
MONOCYTES_19
38.4
MONOCYTES_20
38.3
MONOCYTES_21
38.3
MONOCYTES_22
38.0
MONOCYTES_23
38.0
MONOCYTES_24
37.7
MONOCYTES_25
37.5
MONOCYTES_26
37.4
MONOCYTES_27
37.0
MONOCYTES_28
36.9
MONOCYTES_29
36.8
MONOCYTES_30
36.5
MONOCYTES_31
36.5
MONOCYTES_32
36.5
MONOCYTES_33
35.7
MONOCYTES_34
35.5
MONOCYTES_35
35.4
MONOCYTES_36
35.4
MONOCYTES_37
35.3
MONOCYTES_38
35.0
MONOCYTES_39
34.9
MONOCYTES_40
34.9
MONOCYTES_41
34.8
MONOCYTES_42
34.7
MONOCYTES_43
34.5
MONOCYTES_44
34.5
MONOCYTES_45
34.4
MONOCYTES_46
34.4
MONOCYTES_47
34.1
MONOCYTES_48
33.9
MONOCYTES_49
33.8
MONOCYTES_50
33.8
MONOCYTES_51
33.7
MONOCYTES_52
33.6
MONOCYTES_53
33.5
MONOCYTES_54
33.4
MONOCYTES_55
33.2
MONOCYTES_56
33.1
MONOCYTES_57
33.1
MONOCYTES_58
33.0
MONOCYTES_59
32.9
MONOCYTES_60
32.6
MONOCYTES_61
32.2
MONOCYTES_62
32.1
MONOCYTES_63
32.1
MONOCYTES_64
32.0
MONOCYTES_65
31.9
MONOCYTES_66
31.9
MONOCYTES_67
31.8
MONOCYTES_68
31.7
MONOCYTES_69
31.7
MONOCYTES_70
31.6
MONOCYTES_71
31.3
MONOCYTES_72
31.2
MONOCYTES_73
31.0
MONOCYTES_74
30.8
MONOCYTES_75
30.7
MONOCYTES_76
30.6
MONOCYTES_77
30.6
MONOCYTES_78
30.5
MONOCYTES_79
30.4
MONOCYTES_80
30.2
MONOCYTES_81
30.1
MONOCYTES_82
30.0
MONOCYTES_83
29.1
MONOCYTES_84
29.0
MONOCYTES_85
28.7
MONOCYTES_86
28.6
MONOCYTES_87
28.5
MONOCYTES_88
28.0
MONOCYTES_89
28.0
MONOCYTES_90
27.9
MONOCYTES_91
27.8
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Non-classical monocyte TPM: 22.5
Samples: 90
Max TPM: 36.0
Min TPM: 15.0
M2_1
36.0
M2_2
30.6
M2_3
30.4
M2_4
29.9
M2_5
29.8
M2_6
29.7
M2_7
29.0
M2_8
28.8
M2_9
28.7
M2_10
28.1
M2_11
27.7
M2_12
27.3
M2_13
27.2
M2_14
26.6
M2_15
26.3
M2_16
26.2
M2_17
26.1
M2_18
26.1
M2_19
25.4
M2_20
25.2
M2_21
25.1
M2_22
25.0
M2_23
24.9
M2_24
24.8
M2_25
24.8
M2_26
24.7
M2_27
24.3
M2_28
24.2
M2_29
24.1
M2_30
23.8
M2_31
23.8
M2_32
23.5
M2_33
23.4
M2_34
23.1
M2_35
22.9
M2_36
22.9
M2_37
22.9
M2_38
22.7
M2_39
22.7
M2_40
22.5
M2_41
22.4
M2_42
22.1
M2_43
22.0
M2_44
22.0
M2_45
21.9
M2_46
21.8
M2_47
21.6
M2_48
21.5
M2_49
21.5
M2_50
21.4
M2_51
21.4
M2_52
21.4
M2_53
21.3
M2_54
21.2
M2_55
21.1
M2_56
21.0
M2_57
20.8
M2_58
20.7
M2_59
20.6
M2_60
20.5
M2_61
20.5
M2_62
20.5
M2_63
20.5
M2_64
20.4
M2_65
20.4
M2_66
20.1
M2_67
19.9
M2_68
19.8
M2_69
19.7
M2_70
19.7
M2_71
19.6
M2_72
19.4
M2_73
19.3
M2_74
19.3
M2_75
18.9
M2_76
18.4
M2_77
18.3
M2_78
18.0
M2_79
18.0
M2_80
18.0
M2_81
17.7
M2_82
17.6
M2_83
17.6
M2_84
17.4
M2_85
17.3
M2_86
17.0
M2_87
17.0
M2_88
16.3
M2_89
16.3
M2_90
15.0
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