MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA Brain:111.0 nTPM
GTEx:58.4 nTPM
FANTOM5:182.9 Scaled Tags Per Million
Pig:96.5 nTPM
Mouse:61.5 nTPM
Allen mouse:5.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.8
1827 Male, age 72, unknown 112.9
2666 Male, age 74, left hemisphere 112.8
2411 Female, age 72, unknown 102.9
2019 Male, age 18, unknown 100.4
2586 Male, age 75, left hemisphere 96.7
2828 Female, age 72, unknown 95.7
1870 Female, age 42, unknown 93.9
1833 Male, age 53, unknown 86.8
1830 Male, age 51, unknown 79.1
2219 Male, age 76, both hemispheres 77.3
Dorsal raphe nucleus
nTPM: 100.5
2298 Female, age 72, unknown 122.5
2047 Male, age 72, unknown 105.6
1828 Male, age 53, unknown 99.8
2750 Male, age 76, both hemispheres 98.4
2016 Female, age 72, unknown 76.1
Inferior colliculus
nTPM: 93.4
2097 Female, age 72, unknown 106.5
1848 Female, age 42, unknown 92.3
2849 Male, age 72, unknown 88.1
1890 Male, age 53, unknown 86.5
Median raphe nucleus
nTPM: 101.5
2220 Male, age 76, midline 101.5
Periaquaductal grey, anterior
nTPM: 103.5
1947 Male, age 18, unknown 115.2
1795 Male, age 51, unknown 99.9
2502 Female, age 75, unknown 95.5
Periaquaductal grey, dorsal
nTPM: 82.0
2850 Male, age 76, both hemispheres 87.0
1840 Male, age 53, unknown 86.7
1831 Male, age 72, unknown 81.1
2464 Female, age 72, unknown 73.2
Periaquaductal grey, lateral
nTPM: 84.4
2272 Male, age 74, both hemispheres 86.9
2053 Male, age 18, unknown 84.6
2140 Male, age 76, both hemispheres 81.8
Pretectal area
nTPM: 105.0
1816 Male, age 51, unknown 131.4
1944 Female, age 72, unknown 127.9
2007 Male, age 72, unknown 127.3
1817 Female, age 42, unknown 123.4
1815 Male, age 53, unknown 110.0
2667 Female, age 75, unknown 108.5
2273 Male, age 74, both hemispheres 92.4
2224 Female, age 72, unknown 91.7
2825 Male, age 18, unknown 89.4
2407 Male, age 75, both hemispheres 77.8
2316 Male, age 76, right hemisphere 74.7
Red nucleus
nTPM: 95.0
1821 Female, age 72, unknown 121.3
2725 Female, age 75, unknown 116.0
2785 Male, age 18, unknown 96.3
2503 Female, age 72, unknown 96.2
1954 Female, age 42, unknown 95.6
1865 Male, age 51, unknown 91.7
2584 Male, age 75, left hemisphere 91.6
2588 Male, age 74, left hemisphere 89.9
1904 Male, age 53, unknown 86.8
2769 Male, age 72, unknown 86.3
2823 Male, age 76, right hemisphere 84.7
2227 Male, age 72, unknown 84.0
Substantia nigra
nTPM: 111.0
1916 Female, age 42, unknown 145.7
1941 Male, age 53, unknown 130.3
1889 Female, age 72, unknown 129.9
1851 Male, age 51, unknown 123.4
2241 Male, age 72, unknown 110.0
2409 Female, age 72, unknown 104.4
2583 Male, age 75, right hemisphere 97.0
2699 Male, age 18, unknown 93.0
2590 Female, age 75, unknown 89.1
2665 Male, age 74, both hemispheres 86.8
Superior colliculus
nTPM: 90.9
1796 Male, age 53, unknown 106.5
2087 Female, age 72, unknown 103.1
2261 Male, age 18, unknown 101.1
2587 Male, age 74, left hemisphere 96.0
1895 Male, age 76, right hemisphere 93.9
2668 Female, age 75, unknown 92.2
1839 Male, age 51, unknown 88.9
1913 Female, age 42, unknown 87.4
1995 Male, age 72, unknown 75.0
2664 Male, age 75, both hemispheres 64.6
Ventral tegmental area
nTPM: 97.6
2410 Female, age 72, unknown 127.1
1915 Female, age 42, unknown 110.0
2218 Male, age 76, both hemispheres 100.5
1942 Male, age 51, unknown 86.5
2223 Female, age 72, unknown 84.6
2021 Male, age 53, unknown 76.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.4
Samples: 183

Max nTPM: 150.7
Min nTPM: 29.4
Std nTPM: 17.2
Median nTPM: 55.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 122.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 115.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 108.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 100.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 100.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 98.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 92.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 91.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 85.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.9
FF:10158-103A5 76 years, female 182.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.2
Samples: 4

Max nTPM: 104.7
Min nTPM: 61.9
Sample A Female 101.4
Sample B Female 61.9
Sample C Male 104.7
Sample D Male 64.8
Midbrain
nTPM: 96.5
Samples: 4

Max nTPM: 117.6
Min nTPM: 76.4
Sample A Female 98.9
Sample B Female 76.4
Sample C Male 117.6
Sample D Male 93.2
Periaqueductal gray
nTPM: 72.6
Samples: 3

Max nTPM: 84.2
Min nTPM: 62.6
Sample B Female 71.0
Sample C Male 84.2
Sample D Male 62.6
Superior colliculi
nTPM: 94.3
Samples: 4

Max nTPM: 119.6
Min nTPM: 65.4
Sample A Female 96.8
Sample B Female 65.4
Sample C Male 119.6
Sample D Male 95.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 59.4
Sample A Male 59.4
Sample B Male 61.0
Sample C Female 64.2
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
74641317 Antisense, RP_060220_02_E05, Mouse strain C57BL/6J (56 days, male) 13.6
68638101 Antisense, RP_050126_02_C02, Mouse strain C57BL/6J (56 days, male) 3.8
71496988 Antisense, RP_050913_04_H04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo