HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:241.2 nTPM
HPA Brain:207.4 nTPM
GTEx:241.2 nTPM
FANTOM5:179.2 Scaled Tags Per Million
Pig:87.7 nTPM
Mouse:243.7 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028968Antibody CAB004388
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 207.4
Sample id Sample description nTPM
Hippocampus
nTPM: 141.2
2621 Female, age 67, right hemisphere 197.1
1898 Male, age 80, left hemisphere 147.3
1855 Male, age 76, left hemisphere 142.9
2148 Female, age 91, left hemisphere 129.8
1911 Female, age 85, right hemisphere 124.0
2529 Female, age 94, left hemisphere 105.8
Dentate gyrus
nTPM: 207.4
2530 Female, age 94, left hemisphere 589.3
2528 Male, age 74, both hemispheres 156.2
1927 Female, age 91, both hemispheres 141.2
2010 Male, age 76, both hemispheres 129.9
2246 Female, age 85, both hemispheres 123.3
2531 Female, age 67, both hemispheres 104.4
Entorhinal gyrus
nTPM: 146.9
2613 Female, age 94, left hemisphere 220.5
1938 Female, age 85, left hemisphere 178.0
1787 Male, age 76, left hemisphere 142.2
2686 Male, age 75, right hemisphere 133.5
2764 Male, age 80, right hemisphere 130.9
2117 Female, age 91, right hemisphere 76.4
Hippocampus, CA1
nTPM: 133.2
2749 Male, age 80, left hemisphere 159.3
2527 Male, age 74, both hemispheres 150.8
1873 Female, age 85, both hemispheres 138.9
2082 Female, age 91, right hemisphere 120.3
2045 Male, age 76, both hemispheres 96.7
Hippocampus, CA2
nTPM: 156.4
2437 Female, age 94, left hemisphere 229.4
2249 Male, age 74, both hemispheres 197.8
1963 Male, age 80, left hemisphere 161.9
1940 Female, age 85, left hemisphere 124.8
1892 Male, age 76, both hemispheres 122.5
2113 Female, age 91, right hemisphere 101.9
Hippocampus, CA3
nTPM: 114.0
2861 Female, age 67, both hemispheres 181.9
1891 Female, age 85, both hemispheres 124.5
1867 Male, age 76, both hemispheres 121.9
2436 Male, age 74, both hemispheres 89.2
2620 Female, age 94, left hemisphere 83.9
2137 Male, age 80, left hemisphere 82.8
Parahippocampal cortex
nTPM: 169.2
2692 Male, age 74, both hemispheres 224.8
2250 Female, age 67, right hemisphere 202.2
1990 Female, age 91, right hemisphere 190.9
2622 Female, age 67, right hemisphere 190.6
1850 Male, age 80, both hemispheres 182.8
1933 Female, age 85, both hemispheres 155.5
2245 Female, age 91, both hemispheres 154.7
2532 Female, age 72, left hemisphere 146.7
2693 Female, age 94, both hemispheres 127.1
2018 Male, age 76, both hemispheres 117.0
Perirhinal gyrus
nTPM: 159.2
1847 Female, age 91, left hemisphere 233.1
1841 Female, age 85, right hemisphere 185.8
1794 Male, age 80, right hemisphere 135.6
2848 Male, age 76, right hemisphere 125.4
2521 Female, age 94, right hemisphere 115.9
Subiculum
nTPM: 138.7
2438 Female, age 94, left hemisphere 182.0
2619 Male, age 74, both hemispheres 155.1
1977 Female, age 85, both hemispheres 147.1
1901 Male, age 80, both hemispheres 145.7
2042 Male, age 76, both hemispheres 101.8
2729 Female, age 91, right hemisphere 100.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 241.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 241.2
Samples: 255

Max nTPM: 804.7
Min nTPM: 16.3
Std nTPM: 128.5
Median nTPM: 211.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 804.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 666.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 658.6
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 658.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 594.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 589.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 571.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 552.5
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 540.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 535.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 524.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 179.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 179.2
FF:10153-102I9 76 years, female 193.3
FF:10169-103B7 60 years, female 165.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 87.7
Pig sample Sample description nTPM
Subiculum
nTPM: 77.8
Samples: 4

Max nTPM: 106.0
Min nTPM: 61.9
Sample A Female 106.0
Sample B Female 74.2
Sample C Male 68.9
Sample D Male 61.9
Dorsal hippocampus
nTPM: 65.6
Samples: 4

Max nTPM: 90.5
Min nTPM: 52.3
Sample A Female 90.5
Sample B Female 57.4
Sample C Male 62.0
Sample D Male 52.3
Entorhinal cortex
nTPM: 87.7
Samples: 4

Max nTPM: 97.2
Min nTPM: 71.2
Sample A Female 71.2
Sample B Female 97.2
Sample C Male 88.5
Sample D Male 93.8
Ventral hippocampus
nTPM: 61.2
Samples: 4

Max nTPM: 65.9
Min nTPM: 57.7
Sample A Female 65.9
Sample B Female 57.7
Sample C Male 61.8
Sample D Male 59.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 243.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 243.7
Samples: 4

Max nTPM: 302.1
Min nTPM: 191.3
Sample A Male 302.1
Sample B Male 253.7
Sample C Female 227.6
Sample D Female 191.3
Hippocampal formation
nTPM: 205.6
Samples: 4

Max nTPM: 255.8
Min nTPM: 170.9
Sample A Male 255.8
Sample B Male 193.6
Sample C Female 170.9
Sample D Female 201.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
69817952 Antisense, RP_050510_04_B01, Mouse strain C57BL/6J (56 days, male) 7.3
74749895 Antisense, RP_060220_04_F01, Mouse strain C57BL/6J (56 days, male) 6.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo