A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.1
nTPM
Monaco:
66.0
nTPM
Schmiedel:
77.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
HPA sample
nTPM
Classical monocyte nTPM: 22.1
Samples: 6
Max nTPM: 28.3
Min nTPM: 17.9
P10809_1003
26.1
P10809_1020
28.3
P10809_1039
20.2
P10809_1058
17.9
P10809_1080
20.4
P10809_1107
19.9
Intermediate monocyte nTPM: 31.1
Samples: 6
Max nTPM: 38.4
Min nTPM: 22.4
P10809_1004
35.6
P10809_1023
30.0
P10809_1042
34.1
P10809_1061
38.4
P10809_1081
22.4
P10809_1108
26.2
Non-classical monocyte nTPM: 27.6
Samples: 5
Max nTPM: 40.3
Min nTPM: 12.8
P10809_1005
40.3
P10809_1053
37.4
P10809_1072
12.8
P10809_1082
23.1
P10809_1109
24.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.0
Monaco sample
nTPM
Classical monocyte nTPM: 59.9
Samples: 4
Max nTPM: 65.2
Min nTPM: 55.2
RHH5313_R3680
65.2
RHH5221_R3593
57.5
RHH5250_R3622
61.7
RHH5279_R3651
55.2
Intermediate monocyte nTPM: 65.4
Samples: 4
Max nTPM: 77.5
Min nTPM: 36.6
RHH5314_R3681
71.7
RHH5222_R3594
36.6
RHH5251_R3623
77.5
RHH5280_R3652
75.7
Non-classical monocyte nTPM: 66.0
Samples: 4
Max nTPM: 80.8
Min nTPM: 52.4
RHH5315_R3682
59.2
RHH5223_R3595
52.4
RHH5252_R3624
80.8
RHH5281_R3653
71.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
Schmiedel sample id
TPM
Classical monocyte TPM: 44.1
Samples: 91
Max TPM: 61.9
Min TPM: 31.9
MONOCYTES_1
61.9
MONOCYTES_2
59.2
MONOCYTES_3
57.1
MONOCYTES_4
55.6
MONOCYTES_5
55.1
MONOCYTES_6
54.6
MONOCYTES_7
53.9
MONOCYTES_8
53.7
MONOCYTES_9
53.6
MONOCYTES_10
53.1
MONOCYTES_11
52.5
MONOCYTES_12
51.6
MONOCYTES_13
51.5
MONOCYTES_14
51.1
MONOCYTES_15
50.9
MONOCYTES_16
50.6
MONOCYTES_17
50.4
MONOCYTES_18
49.3
MONOCYTES_19
49.1
MONOCYTES_20
49.0
MONOCYTES_21
48.9
MONOCYTES_22
48.6
MONOCYTES_23
48.2
MONOCYTES_24
48.2
MONOCYTES_25
48.2
MONOCYTES_26
47.8
MONOCYTES_27
47.6
MONOCYTES_28
47.1
MONOCYTES_29
46.9
MONOCYTES_30
46.6
MONOCYTES_31
46.3
MONOCYTES_32
46.3
MONOCYTES_33
45.9
MONOCYTES_34
45.8
MONOCYTES_35
45.5
MONOCYTES_36
45.3
MONOCYTES_37
44.9
MONOCYTES_38
44.8
MONOCYTES_39
44.4
MONOCYTES_40
44.1
MONOCYTES_41
44.0
MONOCYTES_42
43.8
MONOCYTES_43
43.8
MONOCYTES_44
43.6
MONOCYTES_45
43.6
MONOCYTES_46
43.1
MONOCYTES_47
43.0
MONOCYTES_48
42.8
MONOCYTES_49
42.6
MONOCYTES_50
42.6
MONOCYTES_51
42.5
MONOCYTES_52
42.5
MONOCYTES_53
42.4
MONOCYTES_54
42.3
MONOCYTES_55
42.2
MONOCYTES_56
42.0
MONOCYTES_57
42.0
MONOCYTES_58
41.8
MONOCYTES_59
41.7
MONOCYTES_60
41.7
MONOCYTES_61
41.0
MONOCYTES_62
41.0
MONOCYTES_63
40.8
MONOCYTES_64
40.8
MONOCYTES_65
40.7
MONOCYTES_66
40.1
MONOCYTES_67
40.0
MONOCYTES_68
40.0
MONOCYTES_69
39.9
MONOCYTES_70
39.8
MONOCYTES_71
39.3
MONOCYTES_72
38.9
MONOCYTES_73
38.6
MONOCYTES_74
38.6
MONOCYTES_75
38.5
MONOCYTES_76
38.3
MONOCYTES_77
38.0
MONOCYTES_78
37.5
MONOCYTES_79
37.3
MONOCYTES_80
36.8
MONOCYTES_81
36.1
MONOCYTES_82
36.0
MONOCYTES_83
35.9
MONOCYTES_84
35.9
MONOCYTES_85
35.2
MONOCYTES_86
34.7
MONOCYTES_87
34.6
MONOCYTES_88
34.3
MONOCYTES_89
33.9
MONOCYTES_90
32.0
MONOCYTES_91
31.9
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Non-classical monocyte TPM: 77.0
Samples: 90
Max TPM: 106.5
Min TPM: 57.8
M2_1
106.5
M2_2
103.4
M2_3
100.5
M2_4
99.6
M2_5
98.7
M2_6
97.5
M2_7
96.3
M2_8
95.8
M2_9
95.4
M2_10
92.4
M2_11
92.3
M2_12
91.7
M2_13
89.5
M2_14
88.4
M2_15
87.7
M2_16
87.3
M2_17
87.2
M2_18
86.8
M2_19
86.6
M2_20
86.3
M2_21
86.2
M2_22
84.2
M2_23
83.8
M2_24
83.5
M2_25
82.4
M2_26
81.4
M2_27
80.7
M2_28
80.7
M2_29
80.6
M2_30
80.1
M2_31
79.2
M2_32
79.1
M2_33
78.6
M2_34
78.5
M2_35
78.5
M2_36
77.6
M2_37
77.4
M2_38
77.1
M2_39
76.6
M2_40
76.5
M2_41
76.3
M2_42
76.2
M2_43
76.0
M2_44
75.9
M2_45
75.8
M2_46
75.6
M2_47
75.5
M2_48
75.3
M2_49
75.1
M2_50
74.4
M2_51
74.2
M2_52
73.8
M2_53
73.4
M2_54
73.4
M2_55
73.2
M2_56
73.2
M2_57
73.0
M2_58
73.0
M2_59
73.0
M2_60
72.3
M2_61
71.6
M2_62
71.5
M2_63
71.1
M2_64
70.3
M2_65
69.9
M2_66
69.8
M2_67
69.6
M2_68
69.2
M2_69
69.2
M2_70
68.7
M2_71
67.3
M2_72
66.5
M2_73
65.8
M2_74
65.7
M2_75
65.4
M2_76
65.3
M2_77
65.0
M2_78
64.7
M2_79
64.5
M2_80
63.7
M2_81
63.7
M2_82
63.5
M2_83
63.2
M2_84
63.2
M2_85
62.7
M2_86
62.0
M2_87
61.8
M2_88
60.2
M2_89
60.1
M2_90
57.8
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