A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.5
nTPM
Monaco:
80.5
nTPM
Schmiedel:
49.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.5
HPA sample
nTPM
Classical monocyte nTPM: 88.5
Samples: 6
Max nTPM: 100.3
Min nTPM: 74.1
P10809_1003
91.1
P10809_1020
94.5
P10809_1039
100.3
P10809_1058
74.1
P10809_1080
76.3
P10809_1107
94.7
Intermediate monocyte nTPM: 72.7
Samples: 6
Max nTPM: 87.9
Min nTPM: 52.8
P10809_1004
87.9
P10809_1023
52.8
P10809_1042
78.0
P10809_1061
73.6
P10809_1081
67.2
P10809_1108
76.9
Non-classical monocyte nTPM: 74.0
Samples: 5
Max nTPM: 88.3
Min nTPM: 62.0
P10809_1005
84.7
P10809_1053
73.1
P10809_1072
88.3
P10809_1082
62.0
P10809_1109
62.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.5
Monaco sample
nTPM
Classical monocyte nTPM: 80.6
Samples: 4
Max nTPM: 98.1
Min nTPM: 61.5
RHH5313_R3680
61.5
RHH5221_R3593
66.5
RHH5250_R3622
96.1
RHH5279_R3651
98.1
Intermediate monocyte nTPM: 80.1
Samples: 4
Max nTPM: 100.6
Min nTPM: 63.0
RHH5314_R3681
100.6
RHH5222_R3594
74.9
RHH5251_R3623
63.0
RHH5280_R3652
81.8
Non-classical monocyte nTPM: 62.2
Samples: 4
Max nTPM: 69.4
Min nTPM: 54.9
RHH5315_R3682
69.4
RHH5223_R3595
65.0
RHH5252_R3624
54.9
RHH5281_R3653
59.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.0
Schmiedel sample id
TPM
Classical monocyte TPM: 49.0
Samples: 91
Max TPM: 75.9
Min TPM: 31.8
MONOCYTES_1
75.9
MONOCYTES_2
75.0
MONOCYTES_3
74.7
MONOCYTES_4
71.2
MONOCYTES_5
64.6
MONOCYTES_6
64.1
MONOCYTES_7
62.8
MONOCYTES_8
62.4
MONOCYTES_9
61.8
MONOCYTES_10
59.1
MONOCYTES_11
58.7
MONOCYTES_12
58.5
MONOCYTES_13
58.3
MONOCYTES_14
58.3
MONOCYTES_15
58.1
MONOCYTES_16
57.8
MONOCYTES_17
57.5
MONOCYTES_18
57.2
MONOCYTES_19
57.1
MONOCYTES_20
56.3
MONOCYTES_21
55.9
MONOCYTES_22
55.8
MONOCYTES_23
55.8
MONOCYTES_24
54.9
MONOCYTES_25
54.8
MONOCYTES_26
54.5
MONOCYTES_27
54.3
MONOCYTES_28
54.3
MONOCYTES_29
54.1
MONOCYTES_30
54.1
MONOCYTES_31
53.9
MONOCYTES_32
52.6
MONOCYTES_33
52.6
MONOCYTES_34
52.5
MONOCYTES_35
52.0
MONOCYTES_36
51.7
MONOCYTES_37
50.7
MONOCYTES_38
50.5
MONOCYTES_39
50.4
MONOCYTES_40
50.1
MONOCYTES_41
50.1
MONOCYTES_42
49.8
MONOCYTES_43
49.6
MONOCYTES_44
49.4
MONOCYTES_45
49.3
MONOCYTES_46
47.9
MONOCYTES_47
47.8
MONOCYTES_48
47.8
MONOCYTES_49
47.1
MONOCYTES_50
47.0
MONOCYTES_51
46.8
MONOCYTES_52
46.7
MONOCYTES_53
46.5
MONOCYTES_54
46.5
MONOCYTES_55
45.8
MONOCYTES_56
44.8
MONOCYTES_57
44.8
MONOCYTES_58
44.3
MONOCYTES_59
44.1
MONOCYTES_60
43.9
MONOCYTES_61
43.8
MONOCYTES_62
43.5
MONOCYTES_63
42.8
MONOCYTES_64
42.7
MONOCYTES_65
42.2
MONOCYTES_66
42.0
MONOCYTES_67
41.9
MONOCYTES_68
40.9
MONOCYTES_69
40.6
MONOCYTES_70
40.6
MONOCYTES_71
40.6
MONOCYTES_72
40.4
MONOCYTES_73
40.1
MONOCYTES_74
39.8
MONOCYTES_75
39.2
MONOCYTES_76
39.1
MONOCYTES_77
38.9
MONOCYTES_78
38.1
MONOCYTES_79
38.1
MONOCYTES_80
38.0
MONOCYTES_81
37.8
MONOCYTES_82
37.5
MONOCYTES_83
36.7
MONOCYTES_84
36.7
MONOCYTES_85
36.0
MONOCYTES_86
36.0
MONOCYTES_87
35.5
MONOCYTES_88
35.4
MONOCYTES_89
35.2
MONOCYTES_90
35.0
MONOCYTES_91
31.8
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Non-classical monocyte TPM: 37.8
Samples: 90
Max TPM: 58.6
Min TPM: 20.1
M2_1
58.6
M2_2
56.4
M2_3
55.2
M2_4
51.8
M2_5
51.5
M2_6
51.3
M2_7
51.0
M2_8
50.9
M2_9
50.9
M2_10
50.3
M2_11
49.8
M2_12
49.2
M2_13
49.1
M2_14
49.1
M2_15
48.9
M2_16
48.9
M2_17
46.7
M2_18
46.5
M2_19
46.0
M2_20
45.6
M2_21
44.8
M2_22
44.3
M2_23
43.2
M2_24
43.1
M2_25
42.6
M2_26
42.4
M2_27
42.1
M2_28
41.9
M2_29
41.9
M2_30
41.4
M2_31
41.2
M2_32
41.1
M2_33
40.8
M2_34
40.6
M2_35
40.4
M2_36
39.7
M2_37
38.9
M2_38
38.7
M2_39
38.7
M2_40
38.6
M2_41
38.2
M2_42
38.1
M2_43
38.1
M2_44
37.8
M2_45
37.3
M2_46
36.8
M2_47
36.8
M2_48
36.7
M2_49
36.7
M2_50
36.5
M2_51
36.4
M2_52
36.3
M2_53
36.1
M2_54
35.9
M2_55
35.9
M2_56
35.0
M2_57
34.9
M2_58
34.1
M2_59
33.4
M2_60
33.1
M2_61
32.9
M2_62
32.6
M2_63
32.2
M2_64
31.6
M2_65
31.5
M2_66
31.4
M2_67
31.2
M2_68
30.7
M2_69
30.6
M2_70
30.4
M2_71
30.3
M2_72
30.2
M2_73
30.0
M2_74
29.9
M2_75
28.8
M2_76
28.8
M2_77
28.7
M2_78
28.7
M2_79
27.3
M2_80
27.1
M2_81
27.0
M2_82
26.3
M2_83
25.9
M2_84
24.9
M2_85
24.6
M2_86
24.1
M2_87
23.7
M2_88
23.0
M2_89
22.7
M2_90
20.1
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