A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
83.8
nTPM
Monaco:
224.5
nTPM
Schmiedel:
121.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.8
HPA sample
nTPM
Memory B-cell nTPM: 30.8
Samples: 6
Max nTPM: 128.7
Min nTPM: 6.2
P10809_1017
14.3
P10809_1025
7.0
P10809_1044
128.7
P10809_1063
6.6
P10809_1092
6.2
P10809_1105
21.8
Naive B-cell nTPM: 83.8
Samples: 6
Max nTPM: 114.6
Min nTPM: 22.1
P10809_1011
74.7
P10809_1029
106.8
P10809_1048
22.1
P10809_1067
71.9
P10809_1091
112.5
P10809_1104
114.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 57.5
Samples: 4
Max nTPM: 85.5
Min nTPM: 38.0
RHH5310_R3677
48.9
RHH5218_R3590
85.5
RHH5247_R3619
57.5
RHH5276_R3648
38.0
Naive B-cell nTPM: 224.5
Samples: 4
Max nTPM: 274.2
Min nTPM: 177.4
RHH5308_R3675
214.0
RHH5216_R3588
274.2
RHH5245_R3617
177.4
RHH5274_R3646
232.4
Non-switched memory B-cell nTPM: 36.1
Samples: 4
Max nTPM: 58.3
Min nTPM: 15.8
RHH5309_R3676
27.1
RHH5217_R3589
58.3
RHH5246_R3618
43.3
RHH5275_R3647
15.8
Plasmablast nTPM: 6.4
Samples: 4
Max nTPM: 9.1
Min nTPM: 4.8
RHH5312_R3679
9.1
RHH5220_R3592
4.8
RHH5249_R3621
4.8
RHH5278_R3650
6.9
Switched memory B-cell nTPM: 14.4
Samples: 4
Max nTPM: 20.6
Min nTPM: 7.9
RHH5311_R3678
19.5
RHH5219_R3591
20.6
RHH5248_R3620
7.9
RHH5277_R3649
9.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.5
Schmiedel sample id
TPM
Naive B-cell TPM: 121.6
Samples: 91
Max TPM: 272.3
Min TPM: 60.3
B_CELL_NAIVE_1
272.3
B_CELL_NAIVE_2
235.4
B_CELL_NAIVE_3
202.9
B_CELL_NAIVE_4
199.7
B_CELL_NAIVE_5
193.3
B_CELL_NAIVE_6
181.7
B_CELL_NAIVE_7
180.7
B_CELL_NAIVE_8
180.5
B_CELL_NAIVE_9
175.5
B_CELL_NAIVE_10
169.9
B_CELL_NAIVE_11
169.2
B_CELL_NAIVE_12
166.7
B_CELL_NAIVE_13
156.8
B_CELL_NAIVE_14
154.6
B_CELL_NAIVE_15
153.0
B_CELL_NAIVE_16
151.8
B_CELL_NAIVE_17
150.7
B_CELL_NAIVE_18
145.0
B_CELL_NAIVE_19
143.8
B_CELL_NAIVE_20
143.1
B_CELL_NAIVE_21
139.6
B_CELL_NAIVE_22
138.9
B_CELL_NAIVE_23
138.9
B_CELL_NAIVE_24
138.7
B_CELL_NAIVE_25
135.4
B_CELL_NAIVE_26
135.2
B_CELL_NAIVE_27
135.2
B_CELL_NAIVE_28
133.2
B_CELL_NAIVE_29
131.5
B_CELL_NAIVE_30
129.2
B_CELL_NAIVE_31
129.1
B_CELL_NAIVE_32
127.2
B_CELL_NAIVE_33
126.6
B_CELL_NAIVE_34
126.4
B_CELL_NAIVE_35
125.5
B_CELL_NAIVE_36
122.9
B_CELL_NAIVE_37
122.7
B_CELL_NAIVE_38
122.7
B_CELL_NAIVE_39
121.3
B_CELL_NAIVE_40
120.6
B_CELL_NAIVE_41
117.3
B_CELL_NAIVE_42
116.7
B_CELL_NAIVE_43
116.0
B_CELL_NAIVE_44
115.6
B_CELL_NAIVE_45
114.5
B_CELL_NAIVE_46
113.9
B_CELL_NAIVE_47
113.3
B_CELL_NAIVE_48
111.4
B_CELL_NAIVE_49
110.8
B_CELL_NAIVE_50
110.4
B_CELL_NAIVE_51
109.5
B_CELL_NAIVE_52
108.2
B_CELL_NAIVE_53
107.7
B_CELL_NAIVE_54
107.5
B_CELL_NAIVE_55
107.4
B_CELL_NAIVE_56
107.1
B_CELL_NAIVE_57
105.8
B_CELL_NAIVE_58
105.2
B_CELL_NAIVE_59
105.1
B_CELL_NAIVE_60
104.2
B_CELL_NAIVE_61
103.4
B_CELL_NAIVE_62
101.8
B_CELL_NAIVE_63
101.3
B_CELL_NAIVE_64
101.1
B_CELL_NAIVE_65
100.9
B_CELL_NAIVE_66
100.6
B_CELL_NAIVE_67
98.7
B_CELL_NAIVE_68
98.2
B_CELL_NAIVE_69
94.5
B_CELL_NAIVE_70
94.2
B_CELL_NAIVE_71
94.2
B_CELL_NAIVE_72
94.1
B_CELL_NAIVE_73
93.7
B_CELL_NAIVE_74
93.5
B_CELL_NAIVE_75
92.7
B_CELL_NAIVE_76
91.2
B_CELL_NAIVE_77
90.6
B_CELL_NAIVE_78
89.9
B_CELL_NAIVE_79
87.0
B_CELL_NAIVE_80
86.7
B_CELL_NAIVE_81
84.0
B_CELL_NAIVE_82
81.1
B_CELL_NAIVE_83
80.9
B_CELL_NAIVE_84
78.8
B_CELL_NAIVE_85
76.2
B_CELL_NAIVE_86
75.3
B_CELL_NAIVE_87
75.1
B_CELL_NAIVE_88
71.8
B_CELL_NAIVE_89
67.7
B_CELL_NAIVE_90
66.6
B_CELL_NAIVE_91
60.3
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