SLC22A17
HPA
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • SLC22A17
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:104.9 nTPM
HPA Brain:408.8 nTPM
GTEx:104.9 nTPM
FANTOM5:163.7 Scaled Tags Per Million
Macaque:261.6 nTPM
Mouse:443.5 nTPM
Rat:485.4 nTPM
Pig:596.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 268.7
2411 Female, age 72, unknown 357.8
1827 Male, age 72, unknown 324.1
1870 Female, age 42, unknown 300.1
1833 Male, age 53, unknown 270.9
2219 Male, age 76, both hemispheres 267.3
2828 Female, age 72, unknown 250.9
2666 Male, age 74, left hemisphere 236.3
1830 Male, age 51, unknown 235.2
2586 Male, age 75, left hemisphere 226.4
2019 Male, age 18, unknown 217.8
Dorsal raphe nucleus
nTPM: 362.0
2298 Female, age 72, unknown 556.9
2047 Male, age 72, unknown 366.9
2750 Male, age 76, both hemispheres 312.2
1828 Male, age 53, unknown 287.6
2016 Female, age 72, unknown 286.3
Inferior colliculus
nTPM: 331.1
2097 Female, age 72, unknown 421.5
2849 Male, age 72, unknown 324.7
1848 Female, age 42, unknown 300.0
1890 Male, age 53, unknown 278.3
Median raphe nucleus
nTPM: 408.8
2220 Male, age 76, midline 408.8
Periaquaductal grey, anterior
nTPM: 378.8
1947 Male, age 18, unknown 412.2
1795 Male, age 51, unknown 386.7
2502 Female, age 75, unknown 337.6
Periaquaductal grey, dorsal
nTPM: 342.8
1840 Male, age 53, unknown 414.3
2850 Male, age 76, both hemispheres 364.7
2464 Female, age 72, unknown 307.3
1831 Male, age 72, unknown 285.1
Periaquaductal grey, lateral
nTPM: 339.9
2272 Male, age 74, both hemispheres 396.3
2140 Male, age 76, both hemispheres 333.9
2053 Male, age 18, unknown 289.4
Pretectal area
nTPM: 334.2
2224 Female, age 72, unknown 510.2
2273 Male, age 74, both hemispheres 492.6
2825 Male, age 18, unknown 371.6
2667 Female, age 75, unknown 361.6
2007 Male, age 72, unknown 306.1
1816 Male, age 51, unknown 298.2
1817 Female, age 42, unknown 281.6
1944 Female, age 72, unknown 266.9
2407 Male, age 75, both hemispheres 266.3
2316 Male, age 76, right hemisphere 262.8
1815 Male, age 53, unknown 258.0
Red nucleus
nTPM: 195.0
2725 Female, age 75, unknown 238.9
2785 Male, age 18, unknown 221.4
2227 Male, age 72, unknown 215.6
2769 Male, age 72, unknown 214.8
2503 Female, age 72, unknown 212.8
2584 Male, age 75, left hemisphere 203.5
1821 Female, age 72, unknown 198.5
1954 Female, age 42, unknown 181.7
1904 Male, age 53, unknown 176.4
2823 Male, age 76, right hemisphere 169.0
2588 Male, age 74, left hemisphere 155.2
1865 Male, age 51, unknown 152.4
Substantia nigra
nTPM: 226.8
1941 Male, age 53, unknown 281.0
1889 Female, age 72, unknown 277.5
1916 Female, age 42, unknown 272.5
1851 Male, age 51, unknown 257.2
2241 Male, age 72, unknown 227.1
2665 Male, age 74, both hemispheres 215.3
2583 Male, age 75, right hemisphere 203.3
2699 Male, age 18, unknown 199.7
2590 Female, age 75, unknown 187.8
2409 Female, age 72, unknown 146.9
Superior colliculus
nTPM: 276.0
1796 Male, age 53, unknown 340.6
1839 Male, age 51, unknown 325.1
2261 Male, age 18, unknown 301.2
2587 Male, age 74, left hemisphere 290.6
2664 Male, age 75, both hemispheres 283.3
1895 Male, age 76, right hemisphere 279.2
2668 Female, age 75, unknown 262.5
2087 Female, age 72, unknown 255.2
1995 Male, age 72, unknown 213.8
1913 Female, age 42, unknown 208.4
Ventral tegmental area
nTPM: 291.1
1942 Male, age 51, unknown 320.3
2218 Male, age 76, both hemispheres 304.0
1915 Female, age 42, unknown 303.2
2021 Male, age 53, unknown 290.9
2410 Female, age 72, unknown 276.9
2223 Female, age 72, unknown 251.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.9
Samples: 183

Max nTPM: 379.1
Min nTPM: 10.7
Std nTPM: 65.4
Median nTPM: 87.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 379.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 338.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 337.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 286.6
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 270.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 259.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 249.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 240.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 235.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 235.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 231.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 227.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 208.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 207.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 207.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 204.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 203.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 201.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 191.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 190.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 185.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 182.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 179.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 177.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 176.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 173.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 172.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 170.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 165.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 164.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 164.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 161.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 158.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 156.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 153.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 152.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 145.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 145.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 145.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 144.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 140.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 140.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 140.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 140.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 139.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 133.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 129.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 123.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 123.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 123.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 123.2
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 123.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 122.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 118.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 118.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 118.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 117.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 116.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 116.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 115.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 115.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 113.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 112.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 111.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 110.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 110.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 109.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 108.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 107.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 106.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 106.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 106.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 105.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 105.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 104.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 103.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 103.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 99.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 98.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 98.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 97.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 94.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 94.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 93.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 92.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 92.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 92.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 91.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 89.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 87.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 87.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 87.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 85.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 85.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 84.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 84.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 83.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 83.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 80.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 79.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 79.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 79.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 78.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 78.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 77.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 77.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 75.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 74.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 74.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 74.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 73.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 73.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 73.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 73.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 72.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 72.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 72.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 71.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 70.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 68.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 67.1
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 67.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 66.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 66.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 66.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 65.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 64.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 60.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 60.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 57.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 57.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 56.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 55.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 55.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 55.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 54.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 53.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 52.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 52.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 52.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 51.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 51.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 50.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 49.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 48.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 48.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 47.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 47.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 47.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 47.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 46.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 46.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 43.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 43.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 40.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 39.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 36.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 35.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 35.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 34.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 34.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 33.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 33.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 32.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 32.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 31.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 31.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 30.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 30.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 25.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 22.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 21.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 12.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 10.7
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.7
FF:10158-103A5 76 years, female 163.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 151.8
Samples: 1

Max nTPM: 151.8
Min nTPM: 151.8
Sample A 151.8
Midbrain
nTPM: 214.8
Samples: 1

Max nTPM: 214.8
Min nTPM: 214.8
Sample A 214.8
Superior colliculi
nTPM: 261.6
Samples: 1

Max nTPM: 261.6
Min nTPM: 261.6
Sample A 261.6

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

596.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 596.3
Samples: 3

Max nTPM: 740.1
Min nTPM: 385.5
Sample A Female 740.1
Sample B Female 385.5
Sample C Male 663.4
Midbrain
nTPM: 522.2
Samples: 3

Max nTPM: 634.0
Min nTPM: 415.0
Sample B Female 415.0
Sample C Male 517.6
Sample D Male 634.0
Periaqueductal gray
nTPM: 434.3
Samples: 3

Max nTPM: 524.0
Min nTPM: 381.9
Sample B Female 381.9
Sample C Male 524.0
Sample D Male 397.0
Superior colliculi
nTPM: 483.6
Samples: 4

Max nTPM: 657.8
Min nTPM: 354.5
Sample A Female 657.8
Sample B Female 354.5
Sample C Male 435.1
Sample D Male 486.8

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

443.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 443.5
Samples: 4

Max nTPM: 515.1
Min nTPM: 397.2
Sample A 397.2
Sample B 515.1
Sample C 447.2
Sample D 414.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

485.4
Rat sample Sample description nTPM
Midbrain
nTPM: 485.4
Samples: 4

Max nTPM: 536.7
Min nTPM: 401.1
Sample A 487.9
Sample A 536.7
Sample A 515.9
Sample A 401.1

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