We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HNRNPC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HNRNPC
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:252.5 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:233.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051075Antibody CAB005223Antibody CAB075755Antibody CAB075756
Glial cells LowHighLowNot detected
Neuronal cells HighHighHighHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 252.5
Samples: 300

Max nTPM: 415.5
Min nTPM: 177.4
Std nTPM: 38.1
Median nTPM: 245.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 415.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 414.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 378.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 372.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 370.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 360.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 359.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 353.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 353.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 342.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 333.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 325.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 321.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 318.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 318.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 316.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 314.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 314.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 312.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 312.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 312.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 312.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 308.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 307.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 306.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 302.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 301.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 301.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 300.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 300.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 300.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 300.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 299.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 298.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 298.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 296.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 296.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 295.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 294.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 294.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 292.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 291.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 291.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 290.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 290.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 289.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 289.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 289.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 287.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 287.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 287.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 287.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 286.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 286.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 286.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 286.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 286.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 286.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 284.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 283.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 282.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 281.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 280.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 280.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 280.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 279.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 278.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 277.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 277.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 277.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 276.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 274.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 274.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 274.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 273.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 273.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 272.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 272.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 271.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 271.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 270.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 269.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 268.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 267.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 266.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 265.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 265.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 265.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 265.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 265.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 265.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 265.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 264.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 263.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 263.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 262.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 262.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 262.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 262.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 261.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 261.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 261.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 261.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 260.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 260.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 259.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 258.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 258.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 257.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 257.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 257.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 256.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 256.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 256.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 255.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 255.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 255.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 254.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 254.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 253.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 253.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 253.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 253.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 253.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 252.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 252.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 252.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 252.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 252.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 252.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 251.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 250.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 250.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 250.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 249.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 249.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 249.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 249.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 249.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 248.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 247.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 247.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 246.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 246.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 246.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 246.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 246.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 245.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 245.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 245.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 244.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 244.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 244.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 244.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 244.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 244.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 244.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 244.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 243.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 243.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 243.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 242.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 242.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 242.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 242.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 241.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 241.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 241.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 241.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 240.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 240.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 240.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 239.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 239.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 239.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 238.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 238.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 238.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 238.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 238.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 237.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 237.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 237.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 237.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 237.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 237.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 236.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 235.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 235.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 235.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 234.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 234.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 234.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 233.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 233.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 233.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 233.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 233.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 233.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 232.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 232.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 231.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 231.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 231.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 230.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 230.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 230.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 229.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 229.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 228.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 228.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 228.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 228.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 227.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 227.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 227.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 227.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 226.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 226.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 226.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 226.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 226.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 225.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 225.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 225.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 225.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 224.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 224.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 224.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 224.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 224.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 224.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 224.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 224.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 223.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 223.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 223.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 222.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 222.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 221.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 221.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 221.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 220.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 220.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 220.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 220.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 220.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 219.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 219.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 219.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 218.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 218.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 218.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 217.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 217.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 217.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 216.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 216.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 215.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 215.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 214.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 213.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 213.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 213.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 212.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 211.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 211.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 211.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 211.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 210.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 210.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 209.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 208.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 208.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 208.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 208.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 208.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 207.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 207.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 207.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 207.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 206.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 205.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 205.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 204.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 203.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 203.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 203.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 202.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 202.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 201.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 200.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 199.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 198.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 196.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 194.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 194.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 192.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 182.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 177.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.4
FF:10164-103B2 76 years, female 17.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.9
Pig sample Sample description nTPM
Caudate
nTPM: 234.0
Samples: 4

Max nTPM: 248.2
Min nTPM: 212.5
Sample A Female 248.2
Sample B Female 233.7
Sample C Male 241.4
Sample D Male 212.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo