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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:382.1 nTPM
GTEx:382.1 nTPM
FANTOM5:17.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 382.1
Samples: 105

Max nTPM: 533.5
Min nTPM: 228.8
Std nTPM: 58.8
Median nTPM:
447_1 81 years, male 533.5
347_1 72 years, male 531.0
308_1 70 years, female 511.6
379_1 60 years, male 510.7
384_1 83 years, male 502.1
396_1 62 years, male 494.8
315_1 62 years, female 494.7
99_1 64 years, male 481.4
41_1 94 years, female 471.5
375_1 74 years, female 461.5
413_1 59 years, female 453.0
162_1 79 years, female 449.0
491_1 89 years, female 448.9
415_1 77 years, female 448.7
246_1 77 years, male 446.0
414_1 84 years, female 439.0
229_1 69 years, female 435.8
495_1 57 years, female 434.1
265_1 87 years, male 433.8
120_1 70 years, female 432.1
317_1 60 years, male 429.0
6_1 73 years, female 428.9
35_1 74 years, female 426.6
173_1 67 years, male 423.7
316_1 62 years, male 423.2
307_1 66 years, female 422.6
386_1 76 years, male 418.8
324_1 76 years, male 418.2
501_1 88 years, male 417.9
32_1 67 years, male 417.5
266_1 85 years, male 409.1
142_1 61 years, female 408.0
377_1 82 years, female 407.0
42_1 85 years, male 405.9
466_1 57 years, female 405.7
468_1 89 years, male 405.6
139_1 64 years, female 402.1
126_1 63 years, male 400.2
115_1 83 years, male 399.7
322_1 76 years, male 399.0
217_1 76 years, male 398.5
254_1 77 years, female 397.7
89_1 63 years, male 396.1
153_1 70 years, female 394.6
518_1 75 years, female 393.4
145_1 84 years, male 393.1
81_1 67 years, male 390.1
117_1 61 years, male 389.6
526_1 61 years, male 386.2
177_1 74 years, male 383.9
314_1 67 years, male 383.7
389_1 86 years, female 382.6
17_1 71 years, male 379.2
313_1 79 years, female 378.9
376_1 75 years, female 372.6
218_1 71 years, female 372.1
189_1 76 years, male 368.0
321_1 62 years, female 367.7
349_1 83 years, male 366.3
499_1 55 years, female 365.1
18_1 88 years, male 364.0
405_1 91 years, male 361.5
348_1 84 years, male 358.5
286_1 68 years, female 356.3
9_1 66 years, female 355.4
43_1 64 years, female 355.4
4_1 88 years, female 353.5
490_1 67 years, female 351.0
109_1 81 years, female 350.7
404_1 82 years, female 349.2
2_1 77 years, female 348.7
311_1 78 years, male 346.2
119_1 70 years, female 346.0
163_1 78 years, male 345.3
137_1 83 years, male 344.9
354_1 81 years, female 344.9
149_1 88 years, male 340.5
243_1 75 years, male 340.3
351_1 91 years, male 338.8
295_1 61 years, female 336.9
264_1 73 years, female 336.0
291_1 76 years, male 333.2
425_1 59 years, female 332.9
503_1 68 years, male 332.0
353_1 82 years, female 331.1
452_1 88 years, female 331.1
406_1 79 years, male 330.7
394_1 75 years, female 330.4
319_1 81 years, male 322.9
172_1 72 years, female 322.6
288_1 66 years, female 321.3
506_1 65 years, male 319.3
251_1 78 years, male 318.4
480_1 63 years, male 317.1
352_1 62 years, male 315.8
355_1 70 years, female 312.7
350_1 84 years, female 308.9
356_1 87 years, female 308.8
237_1 82 years, male 307.5
517_1 88 years, male 297.0
292_1 71 years, male 295.1
335_1 73 years, female 286.3
320_1 89 years, female 280.9
318_1 68 years, male 273.6
293_1 68 years, female 228.8
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 17.5
FF:10030-101E3 24-65 years, mixed 17.5

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