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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:274.6 nTPM
GTEx:274.6 nTPM
FANTOM5:3.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051075Antibody CAB075755Antibody CAB075756
Squamous epithelial cells HighMediumMedium




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 274.6
Samples: 170

Max nTPM: 718.9
Min nTPM: 166.2
Std nTPM: 74.4
Median nTPM: 263.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 718.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 627.3
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 601.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 491.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 470.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 439.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 398.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 387.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 386.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 383.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 371.8
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 360.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 360.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 360.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 356.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 354.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 352.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 347.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 344.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 344.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 343.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 327.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 326.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 323.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 321.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 319.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 319.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 317.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 317.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 315.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 315.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 310.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 309.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 308.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 308.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 307.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 304.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 302.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 301.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 300.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 300.6
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 300.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 296.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 296.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 295.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 294.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 293.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 293.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 293.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 292.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 292.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 290.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 287.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 287.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 285.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 284.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 284.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 282.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 282.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 281.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 281.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 280.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 280.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 279.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 279.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 279.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 279.5
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 279.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 277.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 277.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 277.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 277.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 277.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 273.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 273.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 271.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 271.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 270.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 269.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 267.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 266.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 266.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 266.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 264.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 264.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 263.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 263.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 263.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 260.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 258.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 256.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 256.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 255.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 254.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 253.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 252.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 251.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 251.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 251.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 251.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 251.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 251.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 249.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 249.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 248.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 248.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 246.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 246.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 244.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 244.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 243.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 240.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 239.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 238.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 236.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 235.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 234.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 233.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 232.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 230.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 230.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 230.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 230.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 230.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 229.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 229.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 229.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 229.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 229.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 228.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 226.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 225.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 224.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 224.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 223.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 223.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 222.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 222.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 222.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 221.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 219.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 218.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 218.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 217.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 213.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 212.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 211.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 210.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 209.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 206.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 206.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 206.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 206.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 205.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 204.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 203.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 201.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 200.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 199.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 198.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 198.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 197.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 196.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 194.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 190.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 189.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 183.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 180.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 169.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 166.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 3.6
FF:10204-103F6 68 years, female 3.6

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