A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.0
nTPM
Monaco:
111.3
nTPM
Schmiedel:
163.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.0
HPA sample
nTPM
Memory B-cell nTPM: 57.0
Samples: 6
Max nTPM: 75.8
Min nTPM: 45.5
P10809_1017
45.5
P10809_1025
75.8
P10809_1044
52.2
P10809_1063
47.5
P10809_1092
64.8
P10809_1105
56.0
Naive B-cell nTPM: 61.0
Samples: 6
Max nTPM: 109.2
Min nTPM: 36.3
P10809_1011
36.3
P10809_1029
55.5
P10809_1048
109.2
P10809_1067
47.8
P10809_1091
59.5
P10809_1104
57.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 80.1
Samples: 4
Max nTPM: 114.8
Min nTPM: 37.3
RHH5310_R3677
75.3
RHH5218_R3590
37.3
RHH5247_R3619
92.8
RHH5276_R3648
114.8
Naive B-cell nTPM: 97.4
Samples: 4
Max nTPM: 125.4
Min nTPM: 55.2
RHH5308_R3675
125.4
RHH5216_R3588
123.1
RHH5245_R3617
55.2
RHH5274_R3646
85.9
Non-switched memory B-cell nTPM: 97.9
Samples: 4
Max nTPM: 110.8
Min nTPM: 87.0
RHH5309_R3676
105.8
RHH5217_R3589
87.0
RHH5246_R3618
110.8
RHH5275_R3647
88.1
Plasmablast nTPM: 111.4
Samples: 4
Max nTPM: 144.1
Min nTPM: 99.5
RHH5312_R3679
99.5
RHH5220_R3592
100.5
RHH5249_R3621
144.1
RHH5278_R3650
101.3
Switched memory B-cell nTPM: 96.7
Samples: 4
Max nTPM: 109.3
Min nTPM: 77.0
RHH5311_R3678
94.1
RHH5219_R3591
77.0
RHH5248_R3620
109.3
RHH5277_R3649
106.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.2
Schmiedel sample id
TPM
Naive B-cell TPM: 163.2
Samples: 91
Max TPM: 210.4
Min TPM: 101.9
B_CELL_NAIVE_1
210.4
B_CELL_NAIVE_2
206.1
B_CELL_NAIVE_3
205.0
B_CELL_NAIVE_4
202.6
B_CELL_NAIVE_5
202.3
B_CELL_NAIVE_6
199.1
B_CELL_NAIVE_7
198.2
B_CELL_NAIVE_8
197.6
B_CELL_NAIVE_9
197.2
B_CELL_NAIVE_10
192.5
B_CELL_NAIVE_11
191.6
B_CELL_NAIVE_12
190.1
B_CELL_NAIVE_13
189.7
B_CELL_NAIVE_14
188.7
B_CELL_NAIVE_15
188.0
B_CELL_NAIVE_16
186.4
B_CELL_NAIVE_17
186.2
B_CELL_NAIVE_18
186.0
B_CELL_NAIVE_19
183.4
B_CELL_NAIVE_20
182.9
B_CELL_NAIVE_21
178.3
B_CELL_NAIVE_22
177.7
B_CELL_NAIVE_23
177.4
B_CELL_NAIVE_24
176.8
B_CELL_NAIVE_25
176.6
B_CELL_NAIVE_26
175.7
B_CELL_NAIVE_27
173.2
B_CELL_NAIVE_28
173.1
B_CELL_NAIVE_29
172.3
B_CELL_NAIVE_30
171.9
B_CELL_NAIVE_31
171.7
B_CELL_NAIVE_32
171.7
B_CELL_NAIVE_33
170.7
B_CELL_NAIVE_34
170.0
B_CELL_NAIVE_35
169.7
B_CELL_NAIVE_36
169.4
B_CELL_NAIVE_37
169.4
B_CELL_NAIVE_38
169.0
B_CELL_NAIVE_39
168.6
B_CELL_NAIVE_40
168.5
B_CELL_NAIVE_41
165.3
B_CELL_NAIVE_42
165.2
B_CELL_NAIVE_43
164.7
B_CELL_NAIVE_44
164.2
B_CELL_NAIVE_45
164.1
B_CELL_NAIVE_46
163.7
B_CELL_NAIVE_47
160.5
B_CELL_NAIVE_48
160.3
B_CELL_NAIVE_49
159.8
B_CELL_NAIVE_50
158.8
B_CELL_NAIVE_51
158.4
B_CELL_NAIVE_52
158.1
B_CELL_NAIVE_53
157.1
B_CELL_NAIVE_54
157.0
B_CELL_NAIVE_55
156.8
B_CELL_NAIVE_56
156.7
B_CELL_NAIVE_57
156.4
B_CELL_NAIVE_58
155.9
B_CELL_NAIVE_59
155.4
B_CELL_NAIVE_60
154.5
B_CELL_NAIVE_61
154.4
B_CELL_NAIVE_62
151.9
B_CELL_NAIVE_63
151.4
B_CELL_NAIVE_64
151.1
B_CELL_NAIVE_65
150.7
B_CELL_NAIVE_66
150.7
B_CELL_NAIVE_67
150.6
B_CELL_NAIVE_68
149.6
B_CELL_NAIVE_69
149.3
B_CELL_NAIVE_70
149.0
B_CELL_NAIVE_71
148.9
B_CELL_NAIVE_72
147.8
B_CELL_NAIVE_73
147.6
B_CELL_NAIVE_74
145.4
B_CELL_NAIVE_75
144.0
B_CELL_NAIVE_76
141.5
B_CELL_NAIVE_77
140.4
B_CELL_NAIVE_78
140.2
B_CELL_NAIVE_79
138.1
B_CELL_NAIVE_80
138.1
B_CELL_NAIVE_81
137.3
B_CELL_NAIVE_82
136.0
B_CELL_NAIVE_83
135.8
B_CELL_NAIVE_84
133.6
B_CELL_NAIVE_85
131.4
B_CELL_NAIVE_86
131.2
B_CELL_NAIVE_87
129.2
B_CELL_NAIVE_88
125.3
B_CELL_NAIVE_89
119.5
B_CELL_NAIVE_90
102.1
B_CELL_NAIVE_91
101.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.