CAPN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • CAPN3
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:65.2 nTPM
GTEx:125.8 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Macaque:5.6 nTPM
Pig:6.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.2
Sample id Sample description nTPM
Putamen
nTPM: 65.2
2482 Female, age 94, left hemisphere 94.9
2489 Female, age 72, unknown 91.4
1829 Male, age 74, unknown 86.3
2647 Male, age 75, left hemisphere 65.5
1937 Female, age 91, right hemisphere 52.3
2466 Female, age 79, unknown 47.8
1838 Male, age 80, right hemisphere 18.2

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.8
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 125.8
Samples: 254

Max nTPM: 523.1
Min nTPM: 14.4
Std nTPM: 64.4
Median nTPM: 118.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 523.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 350.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 325.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 293.4
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 287.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 279.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 261.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 246.8
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 245.1
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 240.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 238.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 236.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 234.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 233.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 229.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 229.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 226.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 217.8
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 216.6
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 215.0
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 214.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 213.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 212.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 211.7
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 210.5
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 209.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 208.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 203.0
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 202.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 201.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 200.6
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 199.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 196.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 195.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 194.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 193.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 193.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 192.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 190.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 188.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 188.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 186.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 185.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 183.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 183.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 181.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 179.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 177.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 175.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 175.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 173.4
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 172.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 171.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 170.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 170.2
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 168.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 167.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 166.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 166.5
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 165.5
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 164.3
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 164.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 164.1
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 163.1
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 159.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 157.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 156.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 153.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 153.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 153.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 152.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 152.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 150.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 150.1
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 150.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 150.0
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 149.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 147.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 146.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 144.2
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 142.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 142.2
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 142.1
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 141.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 141.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 140.0
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 138.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 138.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 137.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 137.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 137.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 136.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 135.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 135.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 134.7
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 134.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 133.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 132.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 132.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 131.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 131.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 130.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 130.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 129.6
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 129.4
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 129.0
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 128.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 128.2
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 127.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 125.4
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 124.9
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 124.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 124.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 124.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 124.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 123.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 123.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 123.0
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 122.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 122.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 122.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 121.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 120.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 120.5
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 120.0
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 120.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 118.9
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 118.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 118.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 118.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 118.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 117.4
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 117.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 116.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 115.7
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 114.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 114.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 114.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 113.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 113.0
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 111.6
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 110.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 109.6
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 109.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 108.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 108.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 107.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 107.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 107.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 106.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 106.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 105.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 105.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 104.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 104.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 103.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 102.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 101.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 99.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 97.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 97.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 97.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 97.5
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 96.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 95.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 95.3
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 95.0
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 94.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 94.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 93.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 92.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 92.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 90.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 89.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 89.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 89.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 88.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 87.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 87.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 86.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 86.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 84.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 83.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 82.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 81.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 81.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 81.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 80.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 80.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 78.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 78.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 77.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 77.8
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 77.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 77.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 74.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 73.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 73.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 71.5
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 70.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 70.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 70.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 70.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 69.8
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 69.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 67.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 64.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 63.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 63.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 63.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 63.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 62.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 62.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 62.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 62.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 61.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 61.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 61.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 60.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 60.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 59.8
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 59.7
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 59.3
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 59.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 58.8
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 56.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 56.0
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 55.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 53.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 51.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 50.8
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 50.0
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 48.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 45.8
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 45.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 45.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 45.2
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 44.4
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 44.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 43.4
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 43.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 41.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.5
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 41.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 41.0
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 38.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 38.7
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 38.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 35.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 34.4
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 25.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 24.3
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 14.4
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

PUTAMEN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.6
Macaque sample Sample description nTPM
Putamen
nTPM: 5.7
Samples: 2

Max nTPM: 6.0
Min nTPM: 5.3
Sample A 6.0
Sample B 5.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.5
Pig sample Sample description nTPM
Putamen
nTPM: 6.5
Samples: 3

Max nTPM: 7.9
Min nTPM: 5.4
Sample B Female 7.9
Sample C Male 5.4
Sample D Male 6.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.