COL9A3
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • COL9A3
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN35 EYE3 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT10 LIVER & GALLBLADDER2 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM8 BREAST & FEMALE REPRODUCTIVE SYSTEM7 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE11 SKIN3 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL SPINAL CORD ENTORHINAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD
CORNEA LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (UPPER)
GALLBLADDER LIVER
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS PENIS PROSTATE SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA VAGINA
AORTA BLOOD VESSEL HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE DURA MATER EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:28.3 nTPM
GTEx:42.7 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:6.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.3
Sample id Sample description nTPM
Putamen
nTPM: 28.3
2647 Male, age 75, left hemisphere 50.6
2489 Female, age 72, unknown 44.5
1829 Male, age 74, unknown 30.1
2482 Female, age 94, left hemisphere 23.8
2466 Female, age 79, unknown 21.1
1937 Female, age 91, right hemisphere 18.2
1838 Male, age 80, right hemisphere 10.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 42.7
Samples: 254

Max nTPM: 129.2
Min nTPM: 2.3
Std nTPM: 18.6
Median nTPM: 40.0
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 129.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 120.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 107.8
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 100.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 99.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 94.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 88.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 80.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 78.9
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 78.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 76.6
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 75.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 75.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 72.3
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 69.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 68.3
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 67.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 67.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 67.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 66.1
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 65.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 65.5
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 65.1
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 64.9
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 63.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 63.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 63.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 62.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 62.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 62.2
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 61.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 60.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 60.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 60.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 60.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 60.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 60.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 59.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 59.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 59.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 59.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 59.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 58.6
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 58.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 58.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 57.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 57.2
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 57.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 56.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 56.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 56.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 55.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 55.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 55.3
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 55.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 55.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 55.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 54.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 54.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 54.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 53.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 53.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 53.3
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 53.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 52.9
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 52.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 52.7
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 52.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 52.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 52.2
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 52.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 52.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 51.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 51.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 51.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 51.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 51.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 51.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 50.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 50.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 49.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 49.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 48.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 48.7
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 48.5
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 48.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 48.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 48.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 47.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 47.9
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 47.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 47.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 47.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 47.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 47.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 47.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 47.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 47.1
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 46.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 46.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 45.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 45.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 45.5
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 45.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 45.0
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 44.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 44.4
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 44.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 44.1
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 43.6
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 43.4
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 43.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 43.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 42.9
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 42.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 42.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 42.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 42.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 42.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 41.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 41.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 41.0
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 40.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 40.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 40.7
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 40.4
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 40.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 40.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 39.8
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 39.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 39.5
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 39.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 38.9
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 38.8
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 38.7
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 38.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 38.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 38.4
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 38.2
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 37.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 37.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 37.4
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 37.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 37.2
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 36.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 36.8
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 36.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 36.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 35.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 35.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 35.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 35.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 35.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 35.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 35.0
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 34.9
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 34.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 34.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 34.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 34.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 34.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 34.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 34.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 34.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 33.9
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 33.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 33.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 33.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 32.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 32.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 32.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 32.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 32.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 32.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 32.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 32.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 32.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 32.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 31.9
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 31.9
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 31.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 31.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 31.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 31.3
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 31.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 30.7
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 30.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 30.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 30.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 30.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 30.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 30.3
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 29.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 29.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 29.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 29.1
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 29.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 29.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 28.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 28.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 28.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 28.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 28.5
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 28.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 28.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 28.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 28.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 27.7
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 27.6
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 27.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 27.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 27.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 27.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 26.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 26.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 25.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 25.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 24.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 24.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 23.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 23.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 22.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 22.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 22.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 21.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 21.7
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 20.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 20.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 20.6
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 20.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 20.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 19.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 19.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 19.2
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 18.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 18.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 17.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 17.7
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 17.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 16.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 16.2
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 15.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 14.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 14.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 14.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 14.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 13.2
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 10.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 10.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 10.1
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 8.5
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 2.3
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 12.1
FF:10176-103C5 60 years, female 12.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.7
Pig sample Sample description nTPM
Putamen
nTPM: 6.8
Samples: 3

Max nTPM: 8.9
Min nTPM: 5.6
Sample B Female 5.8
Sample C Male 5.6
Sample D Male 8.9

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