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  • MYL6
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:579.0 nTPM
HPA Brain:238.9 nTPM
GTEx:579.0 nTPM
FANTOM5:222.2 Scaled Tags Per Million
Pig:385.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA046859Antibody HPA063034
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.9
Sample id Sample description nTPM
Hippocampus
nTPM: 238.9
2529 Female, age 94, left hemisphere 299.2
1898 Male, age 80, left hemisphere 282.4
1855 Male, age 76, left hemisphere 233.1
2621 Female, age 67, right hemisphere 229.7
2148 Female, age 91, left hemisphere 202.2
1911 Female, age 85, right hemisphere 186.9
Dentate gyrus
nTPM: 217.4
2530 Female, age 94, left hemisphere 263.1
2010 Male, age 76, both hemispheres 253.4
2528 Male, age 74, both hemispheres 209.7
2531 Female, age 67, both hemispheres 203.5
2246 Female, age 85, both hemispheres 203.0
1927 Female, age 91, both hemispheres 171.9
Entorhinal gyrus
nTPM: 218.0
2117 Female, age 91, right hemisphere 244.8
2686 Male, age 75, right hemisphere 237.8
2764 Male, age 80, right hemisphere 225.6
1787 Male, age 76, left hemisphere 222.9
1938 Female, age 85, left hemisphere 217.3
2613 Female, age 94, left hemisphere 159.7
Hippocampus, CA1
nTPM: 206.4
2527 Male, age 74, both hemispheres 225.7
2749 Male, age 80, left hemisphere 220.2
1873 Female, age 85, both hemispheres 208.5
2045 Male, age 76, both hemispheres 196.4
2082 Female, age 91, right hemisphere 181.1
Hippocampus, CA2
nTPM: 223.2
1963 Male, age 80, left hemisphere 245.4
2437 Female, age 94, left hemisphere 240.0
1892 Male, age 76, both hemispheres 233.3
2249 Male, age 74, both hemispheres 218.8
1940 Female, age 85, left hemisphere 218.3
2113 Female, age 91, right hemisphere 183.2
Hippocampus, CA3
nTPM: 211.4
2436 Male, age 74, both hemispheres 257.9
1867 Male, age 76, both hemispheres 250.0
1891 Female, age 85, both hemispheres 207.4
2861 Female, age 67, both hemispheres 202.5
2137 Male, age 80, left hemisphere 199.6
2620 Female, age 94, left hemisphere 151.1
Parahippocampal cortex
nTPM: 209.7
2018 Male, age 76, both hemispheres 254.3
2245 Female, age 91, both hemispheres 244.7
1850 Male, age 80, both hemispheres 237.4
1933 Female, age 85, both hemispheres 217.4
1990 Female, age 91, right hemisphere 211.7
2250 Female, age 67, right hemisphere 207.8
2532 Female, age 72, left hemisphere 204.7
2692 Male, age 74, both hemispheres 202.8
2622 Female, age 67, right hemisphere 170.2
2693 Female, age 94, both hemispheres 146.2
Perirhinal gyrus
nTPM: 208.2
1847 Female, age 91, left hemisphere 236.9
2521 Female, age 94, right hemisphere 214.9
1794 Male, age 80, right hemisphere 211.8
1841 Female, age 85, right hemisphere 189.9
2848 Male, age 76, right hemisphere 187.6
Subiculum
nTPM: 219.3
2042 Male, age 76, both hemispheres 256.5
1901 Male, age 80, both hemispheres 233.5
1977 Female, age 85, both hemispheres 223.0
2619 Male, age 74, both hemispheres 216.6
2438 Female, age 94, left hemisphere 202.2
2729 Female, age 91, right hemisphere 184.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

579.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 579.0
Samples: 255

Max nTPM: 1454.6
Min nTPM: 339.6
Std nTPM: 144.7
Median nTPM: 556.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1454.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1169.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1042.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1039.0
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 992.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 955.3
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 941.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 922.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 922.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 910.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 908.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 904.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 861.9
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 850.4
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 835.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 825.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 801.6
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 795.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 794.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 794.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 786.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 784.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 780.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 773.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 771.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 765.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 756.9
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 745.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 725.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 719.4
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 717.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 717.4
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 709.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 703.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 695.8
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 691.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 688.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 685.9
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 684.0
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 682.2
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 679.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 677.3
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 676.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 674.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 669.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 665.7
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 665.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 664.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 662.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 661.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 658.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 657.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 654.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 652.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 651.4
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 648.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 648.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 647.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 646.9
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 641.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 641.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 639.5
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 634.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 632.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 625.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 624.2
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 623.8
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 623.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 622.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 620.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 620.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 618.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 617.0
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 614.8
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 613.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 611.7
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 611.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 611.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 611.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 606.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 605.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 604.8
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 603.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 601.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 600.5
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 599.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 599.3
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 599.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 599.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 598.3
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 597.8
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 596.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 596.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 595.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 591.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 591.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 589.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 589.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 588.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 587.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 584.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 584.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 583.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 583.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 582.7
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 580.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 579.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 579.4
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 575.3
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 574.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 573.3
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 573.1
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 571.4
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 568.7
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 568.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 568.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 567.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 566.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 564.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 563.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 559.2
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 558.9
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 558.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 558.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 557.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 557.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 556.9
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 556.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 556.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 556.0
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 555.6
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 555.2
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 555.0
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 553.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 553.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 551.5
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 550.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 548.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 547.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 546.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 546.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 546.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 545.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 544.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 544.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 541.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 540.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 540.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 539.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 536.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 533.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 533.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 531.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 531.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 530.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 529.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 528.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 528.9
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 528.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 527.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 526.3
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 526.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 525.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 525.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 524.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 524.8
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 521.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 521.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 520.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 519.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 516.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 515.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 514.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 512.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 510.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 507.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 507.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 506.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 505.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 504.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 504.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 502.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 501.1
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 496.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 496.7
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 495.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 494.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 491.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 489.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 488.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 486.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 484.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 484.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 483.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 483.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 482.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 480.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 477.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 475.5
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 474.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 473.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 471.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 470.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 468.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 467.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 465.8
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 464.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 463.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 462.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 461.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 459.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 459.0
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 457.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 456.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 455.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 450.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 449.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 447.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 447.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 445.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 445.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 445.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 444.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 442.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 440.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 439.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 437.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 436.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 432.5
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 431.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 428.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 426.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 423.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 416.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 416.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 412.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 411.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 405.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 404.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 403.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 401.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 396.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 394.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 390.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 388.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 387.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 387.1
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 381.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 379.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 360.9
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 359.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 357.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 350.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 349.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 339.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 222.2
FF:10169-103B7 60 years, female 237.8
FF:10153-102I9 76 years, female 206.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.3
Pig sample Sample description nTPM
Subiculum
nTPM: 352.6
Samples: 4

Max nTPM: 481.8
Min nTPM: 305.2
Sample A Female 481.8
Sample B Female 305.7
Sample C Male 305.2
Sample D Male 317.6
Dorsal hippocampus
nTPM: 379.3
Samples: 4

Max nTPM: 511.1
Min nTPM: 261.0
Sample A Female 511.1
Sample B Female 351.8
Sample C Male 393.3
Sample D Male 261.0
Entorhinal cortex
nTPM: 385.3
Samples: 4

Max nTPM: 472.5
Min nTPM: 277.6
Sample A Female 416.2
Sample B Female 472.5
Sample C Male 374.8
Sample D Male 277.6
Ventral hippocampus
nTPM: 348.0
Samples: 4

Max nTPM: 422.0
Min nTPM: 260.2
Sample A Female 388.0
Sample B Female 260.2
Sample C Male 422.0
Sample D Male 321.8

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