On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
778.6
nTPM
HPA Brain:
316.2
nTPM
GTEx:
778.6
nTPM
FANTOM5:
236.1
Scaled Tags Per Million
Rat:
256.6
nTPM
Pig:
597.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
316.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 262.1
2019
Male, age 18, unknown
307.2
1870
Female, age 42, unknown
296.0
1827
Male, age 72, unknown
295.5
2666
Male, age 74, left hemisphere
289.7
2411
Female, age 72, unknown
284.3
2828
Female, age 72, unknown
257.6
2219
Male, age 76, both hemispheres
250.1
1833
Male, age 53, unknown
223.1
1830
Male, age 51, unknown
217.2
2586
Male, age 75, left hemisphere
200.1
Dorsal raphe nucleus nTPM: 282.4
2298
Female, age 72, unknown
310.4
2047
Male, age 72, unknown
309.3
2750
Male, age 76, both hemispheres
290.9
1828
Male, age 53, unknown
281.4
2016
Female, age 72, unknown
219.8
Inferior colliculus nTPM: 241.8
1890
Male, age 53, unknown
271.1
2097
Female, age 72, unknown
268.5
2849
Male, age 72, unknown
217.1
1848
Female, age 42, unknown
210.3
Median raphe nucleus nTPM: 316.2
2220
Male, age 76, midline
316.2
Periaquaductal grey, anterior nTPM: 248.2
1795
Male, age 51, unknown
271.4
2502
Female, age 75, unknown
242.3
1947
Male, age 18, unknown
230.8
Periaquaductal grey, dorsal nTPM: 253.4
2850
Male, age 76, both hemispheres
322.0
1831
Male, age 72, unknown
249.5
1840
Male, age 53, unknown
232.8
2464
Female, age 72, unknown
209.4
Periaquaductal grey, lateral nTPM: 248.9
2140
Male, age 76, both hemispheres
291.0
2272
Male, age 74, both hemispheres
230.0
2053
Male, age 18, unknown
225.8
Pretectal area nTPM: 300.3
1816
Male, age 51, unknown
388.5
1817
Female, age 42, unknown
385.7
2007
Male, age 72, unknown
369.1
1944
Female, age 72, unknown
345.4
1815
Male, age 53, unknown
338.0
2224
Female, age 72, unknown
276.1
2667
Female, age 75, unknown
264.1
2825
Male, age 18, unknown
247.2
2316
Male, age 76, right hemisphere
243.8
2273
Male, age 74, both hemispheres
233.5
2407
Male, age 75, both hemispheres
212.0
Red nucleus nTPM: 287.2
2725
Female, age 75, unknown
328.4
2503
Female, age 72, unknown
325.9
2785
Male, age 18, unknown
324.4
1821
Female, age 72, unknown
313.2
1865
Male, age 51, unknown
313.1
2823
Male, age 76, right hemisphere
282.4
1954
Female, age 42, unknown
282.2
1904
Male, age 53, unknown
281.2
2588
Male, age 74, left hemisphere
273.3
2227
Male, age 72, unknown
258.6
2769
Male, age 72, unknown
258.1
2584
Male, age 75, left hemisphere
205.0
Substantia nigra nTPM: 296.6
1916
Female, age 42, unknown
371.7
2409
Female, age 72, unknown
330.6
1889
Female, age 72, unknown
321.6
1851
Male, age 51, unknown
306.7
2665
Male, age 74, both hemispheres
306.4
1941
Male, age 53, unknown
302.6
2699
Male, age 18, unknown
283.0
2590
Female, age 75, unknown
266.7
2241
Male, age 72, unknown
257.3
2583
Male, age 75, right hemisphere
219.6
Superior colliculus nTPM: 257.7
2087
Female, age 72, unknown
296.6
2587
Male, age 74, left hemisphere
295.3
1913
Female, age 42, unknown
282.7
2668
Female, age 75, unknown
277.1
2261
Male, age 18, unknown
274.1
1796
Male, age 53, unknown
267.8
1995
Male, age 72, unknown
248.6
1895
Male, age 76, right hemisphere
237.3
1839
Male, age 51, unknown
210.7
2664
Male, age 75, both hemispheres
186.2
Ventral tegmental area nTPM: 280.2
2218
Male, age 76, both hemispheres
317.5
1915
Female, age 42, unknown
310.5
2410
Female, age 72, unknown
298.7
2223
Female, age 72, unknown
262.5
2021
Male, age 53, unknown
250.0
1942
Male, age 51, unknown
242.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
778.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 778.6
Samples: 183
Max nTPM: 2557.5
Min nTPM: 332.0
Std nTPM: 246.2
Median nTPM: 734.3
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2557.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1645.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1599.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1546.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1397.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1397.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1267.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1234.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1151.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1147.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1102.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1100.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1092.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1083.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1058.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1044.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1035.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1009.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1007.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1005.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1000.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
995.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
989.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
989.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
981.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
949.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
932.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
925.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
924.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
915.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
913.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
911.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
908.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
906.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
902.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
900.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
895.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
893.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
889.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
888.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
887.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
884.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
883.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
881.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
881.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
876.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
869.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
868.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
867.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
866.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
865.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
861.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
859.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
857.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
853.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
845.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
845.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
840.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
838.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
824.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
809.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
808.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
807.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
806.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
805.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
802.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
799.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
793.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
791.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
788.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
786.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
785.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
782.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
778.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
776.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
775.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
775.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
772.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
772.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
770.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
766.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
764.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
763.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
760.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
753.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
748.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
745.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
742.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
742.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
737.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
736.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
734.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
729.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
726.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
724.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
721.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
719.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
715.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
713.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
712.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
709.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
706.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
705.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
705.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
704.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
704.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
701.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
701.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
700.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
696.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
692.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
691.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
690.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
686.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
686.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
685.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
684.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
683.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
683.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
683.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
681.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
671.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
670.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
669.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
669.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
668.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
665.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
664.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
663.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
661.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
661.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
657.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
657.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
653.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
650.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
649.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
645.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
642.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
641.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
639.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
637.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
634.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
633.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
628.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
627.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
625.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
624.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
619.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
618.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
602.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
602.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
597.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
597.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
595.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
590.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
589.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
587.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
584.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
583.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
573.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
565.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
561.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
557.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
556.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
555.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
552.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
525.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
522.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
519.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
517.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
513.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
504.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
503.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
500.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
494.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
467.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
467.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
463.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
445.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
420.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
411.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
388.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
332.0
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
597.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 597.2
Samples: 3
Max nTPM: 675.1
Min nTPM: 450.5
Sample A
Female
666.1
Sample B
Female
675.1
Sample C
Male
450.5
Midbrain nTPM: 440.1
Samples: 3
Max nTPM: 504.7
Min nTPM: 366.3
Sample B
Female
449.2
Sample C
Male
504.7
Sample D
Male
366.3
Periaqueductal gray nTPM: 349.4
Samples: 3
Max nTPM: 398.1
Min nTPM: 296.7
Sample B
Female
353.3
Sample C
Male
398.1
Sample D
Male
296.7
Superior colliculi nTPM: 549.4
Samples: 4
Max nTPM: 624.2
Min nTPM: 468.7
Sample A
Female
602.6
Sample B
Female
624.2
Sample C
Male
502.1
Sample D
Male
468.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
256.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 256.6
Samples: 4
Max nTPM: 264.1
Min nTPM: 246.4
Sample A
246.4
Sample A
264.1
Sample A
263.9
Sample A
252.0
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
