A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
55.3
nTPM
Schmiedel:
11.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Classical monocyte nTPM: 16.3
Samples: 6
Max nTPM: 21.3
Min nTPM: 11.9
P10809_1003
20.2
P10809_1020
18.0
P10809_1039
21.3
P10809_1058
11.9
P10809_1080
13.7
P10809_1107
12.4
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 13.0
Min nTPM: 5.4
P10809_1004
13.0
P10809_1023
6.6
P10809_1042
11.4
P10809_1061
11.5
P10809_1081
5.4
P10809_1108
8.3
Non-classical monocyte nTPM: 10.0
Samples: 5
Max nTPM: 27.9
Min nTPM: 2.9
P10809_1005
7.6
P10809_1053
7.1
P10809_1072
27.9
P10809_1082
2.9
P10809_1109
4.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
Monaco sample
nTPM
Classical monocyte nTPM: 55.3
Samples: 4
Max nTPM: 69.3
Min nTPM: 44.9
RHH5313_R3680
69.3
RHH5221_R3593
52.8
RHH5250_R3622
44.9
RHH5279_R3651
54.3
Intermediate monocyte nTPM: 29.8
Samples: 4
Max nTPM: 30.8
Min nTPM: 28.7
RHH5314_R3681
30.4
RHH5222_R3594
30.8
RHH5251_R3623
29.1
RHH5280_R3652
28.7
Non-classical monocyte nTPM: 31.0
Samples: 4
Max nTPM: 43.9
Min nTPM: 17.6
RHH5315_R3682
17.6
RHH5223_R3595
43.9
RHH5252_R3624
25.0
RHH5281_R3653
37.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
Schmiedel sample id
TPM
Classical monocyte TPM: 11.5
Samples: 91
Max TPM: 14.9
Min TPM: 8.8
MONOCYTES_1
14.9
MONOCYTES_2
14.5
MONOCYTES_3
14.4
MONOCYTES_4
14.3
MONOCYTES_5
14.0
MONOCYTES_6
13.8
MONOCYTES_7
13.7
MONOCYTES_8
13.6
MONOCYTES_9
13.5
MONOCYTES_10
13.4
MONOCYTES_11
13.4
MONOCYTES_12
13.4
MONOCYTES_13
13.2
MONOCYTES_14
13.1
MONOCYTES_15
13.0
MONOCYTES_16
12.9
MONOCYTES_17
12.9
MONOCYTES_18
12.7
MONOCYTES_19
12.7
MONOCYTES_20
12.5
MONOCYTES_21
12.5
MONOCYTES_22
12.5
MONOCYTES_23
12.5
MONOCYTES_24
12.4
MONOCYTES_25
12.3
MONOCYTES_26
12.3
MONOCYTES_27
12.3
MONOCYTES_28
12.2
MONOCYTES_29
12.1
MONOCYTES_30
12.0
MONOCYTES_31
12.0
MONOCYTES_32
12.0
MONOCYTES_33
12.0
MONOCYTES_34
11.9
MONOCYTES_35
11.9
MONOCYTES_36
11.7
MONOCYTES_37
11.6
MONOCYTES_38
11.6
MONOCYTES_39
11.5
MONOCYTES_40
11.5
MONOCYTES_41
11.5
MONOCYTES_42
11.5
MONOCYTES_43
11.4
MONOCYTES_44
11.3
MONOCYTES_45
11.3
MONOCYTES_46
11.3
MONOCYTES_47
11.3
MONOCYTES_48
11.3
MONOCYTES_49
11.2
MONOCYTES_50
11.2
MONOCYTES_51
11.1
MONOCYTES_52
11.1
MONOCYTES_53
11.1
MONOCYTES_54
11.1
MONOCYTES_55
11.1
MONOCYTES_56
11.1
MONOCYTES_57
11.1
MONOCYTES_58
11.0
MONOCYTES_59
10.9
MONOCYTES_60
10.9
MONOCYTES_61
10.8
MONOCYTES_62
10.8
MONOCYTES_63
10.6
MONOCYTES_64
10.6
MONOCYTES_65
10.6
MONOCYTES_66
10.6
MONOCYTES_67
10.5
MONOCYTES_68
10.5
MONOCYTES_69
10.5
MONOCYTES_70
10.4
MONOCYTES_71
10.4
MONOCYTES_72
10.4
MONOCYTES_73
10.4
MONOCYTES_74
10.3
MONOCYTES_75
10.3
MONOCYTES_76
10.2
MONOCYTES_77
10.2
MONOCYTES_78
10.1
MONOCYTES_79
9.7
MONOCYTES_80
9.6
MONOCYTES_81
9.6
MONOCYTES_82
9.6
MONOCYTES_83
9.5
MONOCYTES_84
9.5
MONOCYTES_85
9.3
MONOCYTES_86
9.2
MONOCYTES_87
9.1
MONOCYTES_88
9.1
MONOCYTES_89
8.9
MONOCYTES_90
8.9
MONOCYTES_91
8.8
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Non-classical monocyte TPM: 6.5
Samples: 90
Max TPM: 9.6
Min TPM: 4.2
M2_1
9.6
M2_2
9.1
M2_3
9.1
M2_4
8.8
M2_5
8.6
M2_6
8.6
M2_7
8.6
M2_8
8.2
M2_9
8.0
M2_10
7.9
M2_11
7.9
M2_12
7.7
M2_13
7.7
M2_14
7.7
M2_15
7.7
M2_16
7.5
M2_17
7.5
M2_18
7.5
M2_19
7.4
M2_20
7.4
M2_21
7.4
M2_22
7.3
M2_23
7.2
M2_24
7.2
M2_25
7.2
M2_26
7.1
M2_27
7.0
M2_28
7.0
M2_29
7.0
M2_30
7.0
M2_31
6.9
M2_32
6.9
M2_33
6.9
M2_34
6.9
M2_35
6.9
M2_36
6.9
M2_37
6.9
M2_38
6.9
M2_39
6.9
M2_40
6.9
M2_41
6.8
M2_42
6.7
M2_43
6.7
M2_44
6.7
M2_45
6.7
M2_46
6.7
M2_47
6.7
M2_48
6.6
M2_49
6.6
M2_50
6.4
M2_51
6.4
M2_52
6.3
M2_53
6.3
M2_54
6.2
M2_55
6.2
M2_56
6.1
M2_57
6.1
M2_58
6.1
M2_59
6.1
M2_60
5.9
M2_61
5.9
M2_62
5.9
M2_63
5.9
M2_64
5.8
M2_65
5.8
M2_66
5.8
M2_67
5.7
M2_68
5.7
M2_69
5.7
M2_70
5.7
M2_71
5.7
M2_72
5.6
M2_73
5.5
M2_74
5.5
M2_75
5.4
M2_76
5.4
M2_77
5.3
M2_78
5.2
M2_79
5.0
M2_80
4.9
M2_81
4.9
M2_82
4.9
M2_83
4.7
M2_84
4.7
M2_85
4.5
M2_86
4.5
M2_87
4.3
M2_88
4.3
M2_89
4.2
M2_90
4.2
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