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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • CELL LINE

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  • EVOLUTION

  • DPYSL2
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:159.7 nTPM
HPA Brain:925.0 nTPM
GTEx:159.7 nTPM
FANTOM5:999.2 Scaled Tags Per Million
Macaque:504.8 nTPM
Mouse:368.9 nTPM
Rat:337.7 nTPM
Pig:640.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002381Antibody CAB018719
Glial cells HighMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 2310713
Sample Intensity
Hippocampal formation_01
2257630
Hippocampal formation_02
2363797
Hippocampal formation_03
1978226
Hippocampal formation_04
2720159
Hippocampal formation_05
2538330
Hippocampal formation_06
2064275

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

925.0
Sample id Sample description nTPM
Dentate gyrus
nTPM: 795.1
2530 Female, age 94, left hemisphere 984.5
2528 Male, age 74, both hemispheres 854.1
2010 Male, age 76, both hemispheres 822.4
2246 Female, age 85, both hemispheres 747.8
1927 Female, age 91, both hemispheres 732.3
2531 Female, age 67, both hemispheres 629.4
Entorhinal gyrus
nTPM: 925.0
2117 Female, age 91, right hemisphere 1175.3
2764 Male, age 80, right hemisphere 1073.7
1938 Female, age 85, left hemisphere 920.7
1787 Male, age 76, left hemisphere 845.7
2613 Female, age 94, left hemisphere 825.2
2686 Male, age 75, right hemisphere 709.3
Hippocampus, CA1
nTPM: 781.2
2749 Male, age 80, left hemisphere 888.5
2527 Male, age 74, both hemispheres 835.0
1873 Female, age 85, both hemispheres 805.6
2082 Female, age 91, right hemisphere 760.5
2045 Male, age 76, both hemispheres 616.1
Hippocampus, CA2
nTPM: 848.3
1963 Male, age 80, left hemisphere 964.4
2249 Male, age 74, both hemispheres 933.7
2113 Female, age 91, right hemisphere 823.9
2437 Female, age 94, left hemisphere 822.7
1940 Female, age 85, left hemisphere 801.2
1892 Male, age 76, both hemispheres 744.1
Hippocampus, CA3
nTPM: 721.3
1891 Female, age 85, both hemispheres 840.3
2137 Male, age 80, left hemisphere 743.3
2620 Female, age 94, left hemisphere 738.3
1867 Male, age 76, both hemispheres 724.6
2436 Male, age 74, both hemispheres 690.0
2861 Female, age 67, both hemispheres 591.2
Parahippocampal cortex
nTPM: 819.6
1850 Male, age 80, both hemispheres 941.4
1990 Female, age 91, right hemisphere 939.1
2532 Female, age 72, left hemisphere 922.3
2245 Female, age 91, both hemispheres 850.1
1933 Female, age 85, both hemispheres 845.0
2250 Female, age 67, right hemisphere 818.0
2692 Male, age 74, both hemispheres 808.3
2018 Male, age 76, both hemispheres 746.2
2693 Female, age 94, both hemispheres 666.9
2622 Female, age 67, right hemisphere 658.9
Perirhinal gyrus
nTPM: 858.6
1794 Male, age 80, right hemisphere 937.5
1847 Female, age 91, left hemisphere 926.6
1841 Female, age 85, right hemisphere 859.1
2521 Female, age 94, right hemisphere 807.8
2848 Male, age 76, right hemisphere 762.3
Subiculum
nTPM: 887.3
1977 Female, age 85, both hemispheres 978.6
2619 Male, age 74, both hemispheres 904.5
1901 Male, age 80, both hemispheres 896.9
2438 Female, age 94, left hemisphere 859.6
2729 Female, age 91, right hemisphere 842.4
2042 Male, age 76, both hemispheres 841.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 159.7
Samples: 255

Max nTPM: 278.2
Min nTPM: 57.8
Std nTPM: 33.9
Median nTPM: 155.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 278.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 268.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 252.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 249.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 249.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 247.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 237.9
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 232.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 231.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 228.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 222.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 221.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 221.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 219.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 217.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 217.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 214.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 211.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 210.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 209.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 209.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 209.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 207.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 205.0
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 204.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 203.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 202.8
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 202.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 202.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 201.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 200.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 200.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 198.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 197.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 197.7
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 196.1
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 195.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 195.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 194.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 194.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 194.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 191.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 191.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 191.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 190.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 190.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 189.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 189.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 189.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 188.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 188.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 187.6
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 186.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 186.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 186.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 185.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 185.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 184.8
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 183.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 182.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 182.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 181.8
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 179.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 179.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 179.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 177.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 177.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 177.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 176.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 176.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 176.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 175.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 175.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 175.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 174.6
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 173.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 173.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 173.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 172.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 172.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 171.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 171.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 170.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 170.5
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 169.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 169.9
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 169.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 169.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 169.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 168.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 167.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 167.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 167.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 166.9
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 166.7
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 166.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 165.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 165.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 165.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 164.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 164.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 164.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 164.1
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 163.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 163.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 163.2
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 163.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 162.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 162.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 161.6
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 161.6
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 161.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 161.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 160.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 159.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 159.3
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 159.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 158.9
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 158.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 158.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 157.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 157.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 157.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 157.1
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 156.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 156.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 155.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 155.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 154.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 154.9
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 154.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 154.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 153.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 153.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 153.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 152.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 152.6
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 152.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 152.0
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 151.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 151.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 151.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 151.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 151.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 150.8
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 150.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 150.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 150.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 150.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 149.7
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 149.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 149.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 148.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 147.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 147.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 146.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 146.7
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 146.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 145.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 145.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 145.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 145.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 145.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 145.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 145.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 144.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 143.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 143.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 143.6
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 143.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 142.8
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 142.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 142.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 141.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 140.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 140.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 140.6
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 140.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 140.4
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 140.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 139.7
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 139.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 138.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 137.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 137.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 137.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 137.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 136.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 136.8
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 136.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 136.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 136.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 135.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 135.0
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 134.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 134.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 134.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 132.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 132.3
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 132.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 131.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 131.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 130.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 130.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 130.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 130.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 130.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 130.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 130.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 129.9
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 129.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 129.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 129.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 128.9
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 128.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 128.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 127.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 127.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 126.9
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 126.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 126.4
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 126.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 126.0
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 124.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 124.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 123.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 122.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 122.1
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 121.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 121.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 121.0
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 120.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 120.1
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 119.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 119.5
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 116.8
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 116.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 114.9
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 114.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 113.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 113.8
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 113.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 113.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 110.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 110.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 109.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 107.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 105.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 103.6
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 100.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 98.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 98.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 97.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 84.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 57.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

999.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 999.2
FF:10153-102I9 76 years, female 1007.6
FF:10169-103B7 60 years, female 990.8

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.8
Macaque sample Sample description nTPM
Subiculum
nTPM: 402.2
Samples: 1

Max nTPM: 402.2
Min nTPM: 402.2
Sample A 402.2
Entorhinal cortex
nTPM: 458.5
Samples: 2

Max nTPM: 462.3
Min nTPM: 454.6
Sample A 454.6
Sample B 462.3
Hippocampal formation
nTPM: 504.8
Samples: 4

Max nTPM: 663.6
Min nTPM: 386.8
Sample A 464.5
Sample B 386.8
Sample C 504.2
Sample D 663.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

640.8
Pig sample Sample description nTPM
Subiculum
nTPM: 558.3
Samples: 4

Max nTPM: 681.7
Min nTPM: 478.0
Sample A Female 681.7
Sample B Female 534.1
Sample C Male 539.3
Sample D Male 478.0
Dorsal hippocampus
nTPM: 640.8
Samples: 4

Max nTPM: 843.5
Min nTPM: 377.5
Sample A Female 843.5
Sample B Female 624.3
Sample C Male 717.9
Sample D Male 377.5
Entorhinal cortex
nTPM: 490.1
Samples: 4

Max nTPM: 512.6
Min nTPM: 459.1
Sample A Female 509.8
Sample B Female 478.8
Sample C Male 512.6
Sample D Male 459.1
Ventral hippocampus
nTPM: 570.8
Samples: 4

Max nTPM: 687.3
Min nTPM: 402.9
Sample A Female 589.2
Sample B Female 402.9
Sample C Male 687.3
Sample D Male 603.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

368.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 368.9
Samples: 4

Max nTPM: 427.6
Min nTPM: 343.0
Sample A 352.1
Sample B 353.0
Sample C 343.0
Sample D 427.6
Hippocampal formation
nTPM: 335.0
Samples: 4

Max nTPM: 366.0
Min nTPM: 312.8
Sample A 312.8
Sample B 328.8
Sample C 366.0
Sample D 332.5

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

337.7
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 311.6
Samples: 4

Max nTPM: 337.1
Min nTPM: 276.2
Sample A 337.1
Sample A 330.0
Sample A 276.2
Sample B 303.0
Ventral hippocampus
nTPM: 337.8
Samples: 4

Max nTPM: 366.9
Min nTPM: 275.8
Sample A 364.5
Sample A 275.8
Sample A 343.9
Sample A 366.9

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