A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.5
nTPM
Monaco:
384.4
nTPM
Schmiedel:
45.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.5
HPA sample
nTPM
Classical monocyte nTPM: 65.8
Samples: 6
Max nTPM: 94.0
Min nTPM: 41.4
P10809_1003
72.4
P10809_1020
60.0
P10809_1039
41.4
P10809_1058
58.7
P10809_1080
94.0
P10809_1107
68.4
Intermediate monocyte nTPM: 74.5
Samples: 6
Max nTPM: 84.3
Min nTPM: 64.3
P10809_1004
84.3
P10809_1023
72.7
P10809_1042
71.7
P10809_1061
72.5
P10809_1081
81.4
P10809_1108
64.3
Non-classical monocyte nTPM: 49.0
Samples: 5
Max nTPM: 62.5
Min nTPM: 34.9
P10809_1005
47.2
P10809_1053
62.1
P10809_1072
62.5
P10809_1082
38.1
P10809_1109
34.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
384.4
Monaco sample
nTPM
Classical monocyte nTPM: 384.4
Samples: 4
Max nTPM: 500.2
Min nTPM: 327.2
RHH5313_R3680
355.1
RHH5221_R3593
500.2
RHH5250_R3622
355.2
RHH5279_R3651
327.2
Intermediate monocyte nTPM: 293.3
Samples: 4
Max nTPM: 354.1
Min nTPM: 194.0
RHH5314_R3681
331.8
RHH5222_R3594
354.1
RHH5251_R3623
194.0
RHH5280_R3652
293.4
Non-classical monocyte nTPM: 239.7
Samples: 4
Max nTPM: 266.3
Min nTPM: 205.7
RHH5315_R3682
255.8
RHH5223_R3595
266.3
RHH5252_R3624
230.8
RHH5281_R3653
205.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
Schmiedel sample id
TPM
Classical monocyte TPM: 45.5
Samples: 91
Max TPM: 68.6
Min TPM: 22.4
MONOCYTES_1
68.6
MONOCYTES_2
67.8
MONOCYTES_3
66.8
MONOCYTES_4
66.5
MONOCYTES_5
65.8
MONOCYTES_6
61.2
MONOCYTES_7
59.6
MONOCYTES_8
59.3
MONOCYTES_9
58.8
MONOCYTES_10
58.4
MONOCYTES_11
58.2
MONOCYTES_12
56.6
MONOCYTES_13
56.1
MONOCYTES_14
55.6
MONOCYTES_15
55.1
MONOCYTES_16
54.5
MONOCYTES_17
53.3
MONOCYTES_18
52.7
MONOCYTES_19
52.4
MONOCYTES_20
52.3
MONOCYTES_21
52.2
MONOCYTES_22
51.7
MONOCYTES_23
51.5
MONOCYTES_24
51.2
MONOCYTES_25
50.6
MONOCYTES_26
50.6
MONOCYTES_27
50.6
MONOCYTES_28
50.5
MONOCYTES_29
50.4
MONOCYTES_30
50.4
MONOCYTES_31
49.8
MONOCYTES_32
49.8
MONOCYTES_33
49.7
MONOCYTES_34
49.4
MONOCYTES_35
49.3
MONOCYTES_36
49.2
MONOCYTES_37
49.2
MONOCYTES_38
48.9
MONOCYTES_39
48.1
MONOCYTES_40
47.9
MONOCYTES_41
47.1
MONOCYTES_42
47.1
MONOCYTES_43
46.8
MONOCYTES_44
46.7
MONOCYTES_45
45.5
MONOCYTES_46
45.2
MONOCYTES_47
45.2
MONOCYTES_48
45.1
MONOCYTES_49
45.1
MONOCYTES_50
44.7
MONOCYTES_51
43.9
MONOCYTES_52
43.8
MONOCYTES_53
43.2
MONOCYTES_54
42.8
MONOCYTES_55
42.5
MONOCYTES_56
42.0
MONOCYTES_57
42.0
MONOCYTES_58
41.8
MONOCYTES_59
41.6
MONOCYTES_60
41.3
MONOCYTES_61
40.9
MONOCYTES_62
40.5
MONOCYTES_63
39.8
MONOCYTES_64
39.5
MONOCYTES_65
39.2
MONOCYTES_66
38.9
MONOCYTES_67
38.8
MONOCYTES_68
38.5
MONOCYTES_69
38.1
MONOCYTES_70
38.1
MONOCYTES_71
37.6
MONOCYTES_72
37.5
MONOCYTES_73
37.4
MONOCYTES_74
37.0
MONOCYTES_75
36.8
MONOCYTES_76
36.5
MONOCYTES_77
35.8
MONOCYTES_78
34.9
MONOCYTES_79
34.7
MONOCYTES_80
33.9
MONOCYTES_81
32.5
MONOCYTES_82
32.3
MONOCYTES_83
31.9
MONOCYTES_84
30.8
MONOCYTES_85
30.6
MONOCYTES_86
28.6
MONOCYTES_87
27.8
MONOCYTES_88
27.7
MONOCYTES_89
27.6
MONOCYTES_90
26.9
MONOCYTES_91
22.4
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Non-classical monocyte TPM: 34.5
Samples: 90
Max TPM: 52.4
Min TPM: 21.5
M2_1
52.4
M2_2
51.6
M2_3
49.4
M2_4
46.9
M2_5
46.5
M2_6
46.5
M2_7
45.4
M2_8
45.3
M2_9
44.5
M2_10
44.3
M2_11
44.1
M2_12
43.6
M2_13
43.6
M2_14
43.0
M2_15
42.7
M2_16
42.5
M2_17
42.4
M2_18
42.3
M2_19
41.2
M2_20
41.1
M2_21
40.3
M2_22
39.6
M2_23
38.9
M2_24
38.7
M2_25
37.6
M2_26
37.6
M2_27
36.6
M2_28
36.4
M2_29
36.2
M2_30
36.1
M2_31
35.9
M2_32
35.7
M2_33
35.6
M2_34
35.3
M2_35
35.3
M2_36
35.1
M2_37
35.0
M2_38
34.9
M2_39
34.9
M2_40
34.6
M2_41
34.4
M2_42
34.4
M2_43
34.4
M2_44
34.3
M2_45
34.3
M2_46
34.2
M2_47
34.1
M2_48
34.0
M2_49
33.8
M2_50
33.7
M2_51
33.2
M2_52
32.9
M2_53
32.6
M2_54
32.3
M2_55
32.3
M2_56
31.7
M2_57
31.6
M2_58
31.4
M2_59
31.1
M2_60
31.0
M2_61
30.6
M2_62
30.5
M2_63
30.2
M2_64
29.7
M2_65
29.6
M2_66
29.5
M2_67
29.5
M2_68
28.9
M2_69
28.7
M2_70
28.3
M2_71
28.3
M2_72
28.3
M2_73
28.3
M2_74
27.5
M2_75
27.5
M2_76
27.4
M2_77
27.3
M2_78
27.3
M2_79
27.1
M2_80
26.6
M2_81
26.3
M2_82
25.9
M2_83
25.1
M2_84
25.0
M2_85
24.8
M2_86
24.8
M2_87
22.6
M2_88
22.4
M2_89
22.3
M2_90
21.5
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