A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
42.8
nTPM
Schmiedel:
43.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Memory B-cell nTPM: 11.6
Samples: 6
Max nTPM: 16.3
Min nTPM: 6.0
P10809_1017
6.0
P10809_1025
11.8
P10809_1044
12.7
P10809_1063
8.0
P10809_1092
14.6
P10809_1105
16.3
Naive B-cell nTPM: 9.5
Samples: 6
Max nTPM: 12.5
Min nTPM: 4.8
P10809_1011
4.8
P10809_1029
11.5
P10809_1048
8.1
P10809_1067
12.3
P10809_1091
7.6
P10809_1104
12.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 42.8
Samples: 4
Max nTPM: 52.6
Min nTPM: 28.4
RHH5310_R3677
46.2
RHH5218_R3590
52.6
RHH5247_R3619
28.4
RHH5276_R3648
44.1
Naive B-cell nTPM: 32.8
Samples: 4
Max nTPM: 40.9
Min nTPM: 28.5
RHH5308_R3675
32.6
RHH5216_R3588
29.0
RHH5245_R3617
28.5
RHH5274_R3646
40.9
Non-switched memory B-cell nTPM: 31.4
Samples: 4
Max nTPM: 41.2
Min nTPM: 21.2
RHH5309_R3676
27.8
RHH5217_R3589
41.2
RHH5246_R3618
21.2
RHH5275_R3647
35.3
Plasmablast nTPM: 34.7
Samples: 4
Max nTPM: 50.1
Min nTPM: 25.4
RHH5312_R3679
50.1
RHH5220_R3592
35.1
RHH5249_R3621
25.4
RHH5278_R3650
28.2
Switched memory B-cell nTPM: 38.0
Samples: 4
Max nTPM: 48.0
Min nTPM: 27.5
RHH5311_R3678
27.5
RHH5219_R3591
48.0
RHH5248_R3620
45.1
RHH5277_R3649
31.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.6
Schmiedel sample id
TPM
Naive B-cell TPM: 43.6
Samples: 91
Max TPM: 60.5
Min TPM: 24.4
B_CELL_NAIVE_1
60.5
B_CELL_NAIVE_2
59.5
B_CELL_NAIVE_3
57.1
B_CELL_NAIVE_4
55.3
B_CELL_NAIVE_5
55.2
B_CELL_NAIVE_6
54.5
B_CELL_NAIVE_7
54.3
B_CELL_NAIVE_8
51.7
B_CELL_NAIVE_9
50.9
B_CELL_NAIVE_10
50.6
B_CELL_NAIVE_11
50.1
B_CELL_NAIVE_12
49.9
B_CELL_NAIVE_13
49.8
B_CELL_NAIVE_14
49.6
B_CELL_NAIVE_15
49.6
B_CELL_NAIVE_16
49.4
B_CELL_NAIVE_17
49.2
B_CELL_NAIVE_18
49.0
B_CELL_NAIVE_19
48.7
B_CELL_NAIVE_20
48.6
B_CELL_NAIVE_21
48.4
B_CELL_NAIVE_22
48.2
B_CELL_NAIVE_23
47.7
B_CELL_NAIVE_24
47.6
B_CELL_NAIVE_25
47.2
B_CELL_NAIVE_26
46.6
B_CELL_NAIVE_27
46.6
B_CELL_NAIVE_28
46.5
B_CELL_NAIVE_29
46.4
B_CELL_NAIVE_30
46.2
B_CELL_NAIVE_31
46.2
B_CELL_NAIVE_32
45.7
B_CELL_NAIVE_33
45.6
B_CELL_NAIVE_34
45.5
B_CELL_NAIVE_35
45.3
B_CELL_NAIVE_36
45.0
B_CELL_NAIVE_37
44.8
B_CELL_NAIVE_38
44.5
B_CELL_NAIVE_39
44.5
B_CELL_NAIVE_40
44.4
B_CELL_NAIVE_41
43.8
B_CELL_NAIVE_42
43.6
B_CELL_NAIVE_43
43.6
B_CELL_NAIVE_44
43.5
B_CELL_NAIVE_45
43.3
B_CELL_NAIVE_46
43.2
B_CELL_NAIVE_47
43.2
B_CELL_NAIVE_48
42.8
B_CELL_NAIVE_49
42.6
B_CELL_NAIVE_50
42.3
B_CELL_NAIVE_51
42.2
B_CELL_NAIVE_52
42.2
B_CELL_NAIVE_53
42.1
B_CELL_NAIVE_54
41.7
B_CELL_NAIVE_55
41.6
B_CELL_NAIVE_56
41.5
B_CELL_NAIVE_57
41.3
B_CELL_NAIVE_58
41.2
B_CELL_NAIVE_59
41.2
B_CELL_NAIVE_60
40.7
B_CELL_NAIVE_61
40.6
B_CELL_NAIVE_62
40.5
B_CELL_NAIVE_63
40.0
B_CELL_NAIVE_64
39.9
B_CELL_NAIVE_65
39.8
B_CELL_NAIVE_66
39.7
B_CELL_NAIVE_67
39.7
B_CELL_NAIVE_68
39.6
B_CELL_NAIVE_69
39.3
B_CELL_NAIVE_70
39.1
B_CELL_NAIVE_71
39.1
B_CELL_NAIVE_72
38.6
B_CELL_NAIVE_73
38.5
B_CELL_NAIVE_74
38.4
B_CELL_NAIVE_75
37.7
B_CELL_NAIVE_76
37.7
B_CELL_NAIVE_77
37.3
B_CELL_NAIVE_78
37.3
B_CELL_NAIVE_79
37.1
B_CELL_NAIVE_80
36.6
B_CELL_NAIVE_81
36.3
B_CELL_NAIVE_82
36.3
B_CELL_NAIVE_83
35.8
B_CELL_NAIVE_84
35.8
B_CELL_NAIVE_85
35.7
B_CELL_NAIVE_86
35.5
B_CELL_NAIVE_87
35.3
B_CELL_NAIVE_88
33.0
B_CELL_NAIVE_89
32.5
B_CELL_NAIVE_90
32.0
B_CELL_NAIVE_91
24.4
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