A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.0
nTPM
Monaco:
40.7
nTPM
Schmiedel:
30.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.0
HPA sample
nTPM
Classical monocyte nTPM: 7.3
Samples: 6
Max nTPM: 8.0
Min nTPM: 6.1
P10809_1003
8.0
P10809_1020
7.9
P10809_1039
7.8
P10809_1058
6.1
P10809_1080
7.3
P10809_1107
6.6
Intermediate monocyte nTPM: 10.6
Samples: 6
Max nTPM: 13.7
Min nTPM: 5.5
P10809_1004
11.8
P10809_1023
5.5
P10809_1042
8.5
P10809_1061
13.1
P10809_1081
10.9
P10809_1108
13.7
Non-classical monocyte nTPM: 18.0
Samples: 5
Max nTPM: 37.8
Min nTPM: 11.0
P10809_1005
13.1
P10809_1053
12.5
P10809_1072
37.8
P10809_1082
11.0
P10809_1109
15.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.7
Monaco sample
nTPM
Classical monocyte nTPM: 28.2
Samples: 4
Max nTPM: 38.6
Min nTPM: 19.6
RHH5313_R3680
26.6
RHH5221_R3593
19.6
RHH5250_R3622
27.9
RHH5279_R3651
38.6
Intermediate monocyte nTPM: 40.8
Samples: 4
Max nTPM: 45.1
Min nTPM: 36.5
RHH5314_R3681
37.2
RHH5222_R3594
44.2
RHH5251_R3623
36.5
RHH5280_R3652
45.1
Non-classical monocyte nTPM: 39.7
Samples: 4
Max nTPM: 52.0
Min nTPM: 28.9
RHH5315_R3682
28.9
RHH5223_R3595
52.0
RHH5252_R3624
39.3
RHH5281_R3653
38.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Schmiedel sample id
TPM
Classical monocyte TPM: 16.9
Samples: 91
Max TPM: 21.9
Min TPM: 12.9
MONOCYTES_1
21.9
MONOCYTES_2
21.9
MONOCYTES_3
21.5
MONOCYTES_4
21.5
MONOCYTES_5
21.3
MONOCYTES_6
20.8
MONOCYTES_7
20.7
MONOCYTES_8
20.6
MONOCYTES_9
20.5
MONOCYTES_10
20.4
MONOCYTES_11
20.3
MONOCYTES_12
20.0
MONOCYTES_13
20.0
MONOCYTES_14
19.8
MONOCYTES_15
19.7
MONOCYTES_16
19.2
MONOCYTES_17
19.0
MONOCYTES_18
18.8
MONOCYTES_19
18.8
MONOCYTES_20
18.8
MONOCYTES_21
18.8
MONOCYTES_22
18.7
MONOCYTES_23
18.4
MONOCYTES_24
18.2
MONOCYTES_25
17.9
MONOCYTES_26
17.9
MONOCYTES_27
17.9
MONOCYTES_28
17.8
MONOCYTES_29
17.8
MONOCYTES_30
17.7
MONOCYTES_31
17.7
MONOCYTES_32
17.7
MONOCYTES_33
17.7
MONOCYTES_34
17.6
MONOCYTES_35
17.5
MONOCYTES_36
17.5
MONOCYTES_37
17.3
MONOCYTES_38
17.3
MONOCYTES_39
17.2
MONOCYTES_40
17.2
MONOCYTES_41
17.1
MONOCYTES_42
17.0
MONOCYTES_43
17.0
MONOCYTES_44
16.9
MONOCYTES_45
16.8
MONOCYTES_46
16.8
MONOCYTES_47
16.8
MONOCYTES_48
16.8
MONOCYTES_49
16.8
MONOCYTES_50
16.6
MONOCYTES_51
16.6
MONOCYTES_52
16.6
MONOCYTES_53
16.4
MONOCYTES_54
16.4
MONOCYTES_55
16.3
MONOCYTES_56
16.3
MONOCYTES_57
16.3
MONOCYTES_58
16.0
MONOCYTES_59
16.0
MONOCYTES_60
15.9
MONOCYTES_61
15.9
MONOCYTES_62
15.9
MONOCYTES_63
15.8
MONOCYTES_64
15.6
MONOCYTES_65
15.5
MONOCYTES_66
15.5
MONOCYTES_67
15.4
MONOCYTES_68
15.4
MONOCYTES_69
15.2
MONOCYTES_70
15.2
MONOCYTES_71
15.0
MONOCYTES_72
15.0
MONOCYTES_73
14.9
MONOCYTES_74
14.8
MONOCYTES_75
14.7
MONOCYTES_76
14.7
MONOCYTES_77
14.7
MONOCYTES_78
14.3
MONOCYTES_79
14.1
MONOCYTES_80
13.8
MONOCYTES_81
13.8
MONOCYTES_82
13.8
MONOCYTES_83
13.7
MONOCYTES_84
13.5
MONOCYTES_85
13.5
MONOCYTES_86
13.4
MONOCYTES_87
13.4
MONOCYTES_88
13.3
MONOCYTES_89
13.3
MONOCYTES_90
13.0
MONOCYTES_91
12.9
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Non-classical monocyte TPM: 30.5
Samples: 90
Max TPM: 46.0
Min TPM: 18.8
M2_1
46.0
M2_2
43.3
M2_3
41.3
M2_4
38.9
M2_5
37.7
M2_6
37.6
M2_7
37.5
M2_8
37.3
M2_9
37.2
M2_10
37.2
M2_11
36.8
M2_12
36.2
M2_13
35.7
M2_14
35.5
M2_15
35.5
M2_16
35.4
M2_17
35.4
M2_18
35.2
M2_19
34.9
M2_20
34.7
M2_21
34.7
M2_22
34.6
M2_23
34.5
M2_24
34.5
M2_25
34.3
M2_26
34.1
M2_27
33.9
M2_28
33.8
M2_29
33.7
M2_30
33.3
M2_31
32.8
M2_32
32.3
M2_33
32.3
M2_34
32.2
M2_35
32.1
M2_36
32.0
M2_37
31.8
M2_38
31.8
M2_39
31.4
M2_40
31.3
M2_41
31.0
M2_42
30.7
M2_43
30.7
M2_44
30.5
M2_45
30.5
M2_46
30.1
M2_47
30.0
M2_48
29.8
M2_49
29.7
M2_50
29.6
M2_51
29.5
M2_52
29.5
M2_53
29.5
M2_54
29.3
M2_55
29.1
M2_56
29.0
M2_57
28.7
M2_58
28.6
M2_59
28.6
M2_60
28.1
M2_61
27.9
M2_62
27.8
M2_63
27.5
M2_64
27.4
M2_65
27.0
M2_66
26.9
M2_67
26.6
M2_68
26.6
M2_69
26.4
M2_70
26.3
M2_71
26.1
M2_72
26.1
M2_73
25.8
M2_74
25.7
M2_75
25.7
M2_76
25.5
M2_77
25.1
M2_78
24.9
M2_79
24.6
M2_80
24.3
M2_81
24.2
M2_82
24.1
M2_83
24.1
M2_84
22.5
M2_85
22.4
M2_86
22.1
M2_87
21.9
M2_88
21.5
M2_89
20.4
M2_90
18.8
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