A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
24.1
nTPM
Schmiedel:
17.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
Classical monocyte nTPM: 1.3
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
2.3
P10809_1039
1.0
P10809_1058
1.2
P10809_1080
1.3
P10809_1107
1.3
Intermediate monocyte nTPM: 4.5
Samples: 6
Max nTPM: 10.4
Min nTPM: 1.8
P10809_1004
2.9
P10809_1023
6.5
P10809_1042
2.9
P10809_1061
10.4
P10809_1081
2.2
P10809_1108
1.8
Non-classical monocyte nTPM: 3.9
Samples: 5
Max nTPM: 6.4
Min nTPM: 2.5
P10809_1005
4.4
P10809_1053
6.4
P10809_1072
2.5
P10809_1082
3.0
P10809_1109
3.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Monaco sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 4
Max nTPM: 13.3
Min nTPM: 1.1
RHH5313_R3680
6.4
RHH5221_R3593
9.4
RHH5250_R3622
13.3
RHH5279_R3651
1.1
Intermediate monocyte nTPM: 15.6
Samples: 4
Max nTPM: 18.4
Min nTPM: 13.1
RHH5314_R3681
13.1
RHH5222_R3594
17.7
RHH5251_R3623
18.4
RHH5280_R3652
13.1
Non-classical monocyte nTPM: 24.1
Samples: 4
Max nTPM: 33.3
Min nTPM: 14.7
RHH5315_R3682
21.3
RHH5223_R3595
27.0
RHH5252_R3624
33.3
RHH5281_R3653
14.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.6
Schmiedel sample id
TPM
Classical monocyte TPM: 3.8
Samples: 91
Max TPM: 7.1
Min TPM: 1.4
MONOCYTES_1
7.1
MONOCYTES_2
6.9
MONOCYTES_3
6.4
MONOCYTES_4
5.4
MONOCYTES_5
5.4
MONOCYTES_6
5.3
MONOCYTES_7
5.3
MONOCYTES_8
5.3
MONOCYTES_9
5.1
MONOCYTES_10
5.1
MONOCYTES_11
5.0
MONOCYTES_12
5.0
MONOCYTES_13
4.9
MONOCYTES_14
4.8
MONOCYTES_15
4.8
MONOCYTES_16
4.8
MONOCYTES_17
4.7
MONOCYTES_18
4.7
MONOCYTES_19
4.6
MONOCYTES_20
4.6
MONOCYTES_21
4.5
MONOCYTES_22
4.4
MONOCYTES_23
4.3
MONOCYTES_24
4.3
MONOCYTES_25
4.2
MONOCYTES_26
4.1
MONOCYTES_27
4.1
MONOCYTES_28
4.1
MONOCYTES_29
4.1
MONOCYTES_30
4.1
MONOCYTES_31
4.1
MONOCYTES_32
4.1
MONOCYTES_33
4.1
MONOCYTES_34
4.0
MONOCYTES_35
4.0
MONOCYTES_36
4.0
MONOCYTES_37
4.0
MONOCYTES_38
3.9
MONOCYTES_39
3.9
MONOCYTES_40
3.8
MONOCYTES_41
3.8
MONOCYTES_42
3.8
MONOCYTES_43
3.7
MONOCYTES_44
3.7
MONOCYTES_45
3.7
MONOCYTES_46
3.7
MONOCYTES_47
3.6
MONOCYTES_48
3.6
MONOCYTES_49
3.6
MONOCYTES_50
3.6
MONOCYTES_51
3.6
MONOCYTES_52
3.6
MONOCYTES_53
3.6
MONOCYTES_54
3.6
MONOCYTES_55
3.6
MONOCYTES_56
3.5
MONOCYTES_57
3.5
MONOCYTES_58
3.4
MONOCYTES_59
3.4
MONOCYTES_60
3.4
MONOCYTES_61
3.4
MONOCYTES_62
3.3
MONOCYTES_63
3.3
MONOCYTES_64
3.2
MONOCYTES_65
3.1
MONOCYTES_66
3.1
MONOCYTES_67
3.1
MONOCYTES_68
3.1
MONOCYTES_69
3.0
MONOCYTES_70
3.0
MONOCYTES_71
2.9
MONOCYTES_72
2.9
MONOCYTES_73
2.8
MONOCYTES_74
2.8
MONOCYTES_75
2.8
MONOCYTES_76
2.8
MONOCYTES_77
2.8
MONOCYTES_78
2.7
MONOCYTES_79
2.6
MONOCYTES_80
2.5
MONOCYTES_81
2.5
MONOCYTES_82
2.3
MONOCYTES_83
2.3
MONOCYTES_84
2.3
MONOCYTES_85
2.2
MONOCYTES_86
2.2
MONOCYTES_87
2.2
MONOCYTES_88
2.0
MONOCYTES_89
1.9
MONOCYTES_90
1.7
MONOCYTES_91
1.4
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Non-classical monocyte TPM: 17.6
Samples: 90
Max TPM: 29.8
Min TPM: 9.9
M2_1
29.8
M2_2
29.3
M2_3
29.3
M2_4
27.6
M2_5
26.5
M2_6
24.7
M2_7
24.1
M2_8
23.6
M2_9
23.4
M2_10
22.9
M2_11
22.3
M2_12
21.7
M2_13
21.7
M2_14
21.4
M2_15
21.4
M2_16
21.3
M2_17
21.1
M2_18
21.0
M2_19
20.7
M2_20
20.7
M2_21
20.4
M2_22
20.3
M2_23
19.9
M2_24
19.8
M2_25
19.5
M2_26
19.4
M2_27
19.2
M2_28
19.2
M2_29
19.2
M2_30
18.1
M2_31
18.1
M2_32
18.0
M2_33
18.0
M2_34
17.9
M2_35
17.8
M2_36
17.7
M2_37
17.7
M2_38
17.7
M2_39
17.5
M2_40
17.3
M2_41
17.2
M2_42
17.0
M2_43
17.0
M2_44
17.0
M2_45
16.5
M2_46
16.4
M2_47
16.3
M2_48
16.2
M2_49
16.2
M2_50
15.9
M2_51
15.9
M2_52
15.9
M2_53
15.8
M2_54
15.8
M2_55
15.8
M2_56
15.7
M2_57
15.6
M2_58
15.5
M2_59
15.5
M2_60
15.4
M2_61
15.4
M2_62
15.3
M2_63
15.2
M2_64
15.2
M2_65
14.9
M2_66
14.8
M2_67
14.8
M2_68
14.8
M2_69
14.7
M2_70
14.7
M2_71
14.4
M2_72
14.4
M2_73
14.0
M2_74
13.9
M2_75
13.9
M2_76
13.8
M2_77
13.8
M2_78
13.7
M2_79
13.5
M2_80
13.5
M2_81
13.4
M2_82
13.2
M2_83
13.1
M2_84
12.9
M2_85
12.9
M2_86
12.8
M2_87
12.8
M2_88
12.8
M2_89
10.7
M2_90
9.9
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