A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.8
nTPM
Monaco:
54.1
nTPM
Schmiedel:
30.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
HPA sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 6
Max nTPM: 27.9
Min nTPM: 12.7
P10809_1003
14.9
P10809_1020
20.9
P10809_1039
27.9
P10809_1058
12.7
P10809_1080
18.2
P10809_1107
14.3
Intermediate monocyte nTPM: 20.9
Samples: 6
Max nTPM: 28.3
Min nTPM: 10.9
P10809_1004
21.9
P10809_1023
27.6
P10809_1042
28.3
P10809_1061
10.9
P10809_1081
20.9
P10809_1108
15.9
Non-classical monocyte nTPM: 23.8
Samples: 5
Max nTPM: 34.9
Min nTPM: 17.2
P10809_1005
21.4
P10809_1053
34.9
P10809_1072
23.3
P10809_1082
17.2
P10809_1109
22.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.1
Monaco sample
nTPM
Classical monocyte nTPM: 42.2
Samples: 4
Max nTPM: 47.8
Min nTPM: 36.6
RHH5313_R3680
47.8
RHH5221_R3593
41.8
RHH5250_R3622
42.8
RHH5279_R3651
36.6
Intermediate monocyte nTPM: 42.6
Samples: 4
Max nTPM: 59.0
Min nTPM: 33.1
RHH5314_R3681
33.1
RHH5222_R3594
59.0
RHH5251_R3623
39.9
RHH5280_R3652
38.2
Non-classical monocyte nTPM: 54.2
Samples: 4
Max nTPM: 63.1
Min nTPM: 47.4
RHH5315_R3682
53.1
RHH5223_R3595
53.0
RHH5252_R3624
47.4
RHH5281_R3653
63.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.5
Schmiedel sample id
TPM
Classical monocyte TPM: 21.8
Samples: 91
Max TPM: 32.0
Min TPM: 14.0
MONOCYTES_1
32.0
MONOCYTES_2
28.7
MONOCYTES_3
28.2
MONOCYTES_4
28.0
MONOCYTES_5
27.8
MONOCYTES_6
27.8
MONOCYTES_7
27.5
MONOCYTES_8
27.2
MONOCYTES_9
26.6
MONOCYTES_10
26.2
MONOCYTES_11
26.1
MONOCYTES_12
26.0
MONOCYTES_13
25.9
MONOCYTES_14
25.7
MONOCYTES_15
25.4
MONOCYTES_16
25.3
MONOCYTES_17
25.3
MONOCYTES_18
25.2
MONOCYTES_19
25.0
MONOCYTES_20
25.0
MONOCYTES_21
24.9
MONOCYTES_22
24.9
MONOCYTES_23
24.6
MONOCYTES_24
24.3
MONOCYTES_25
24.0
MONOCYTES_26
23.9
MONOCYTES_27
23.7
MONOCYTES_28
23.7
MONOCYTES_29
23.6
MONOCYTES_30
23.3
MONOCYTES_31
23.3
MONOCYTES_32
23.2
MONOCYTES_33
23.2
MONOCYTES_34
23.2
MONOCYTES_35
23.2
MONOCYTES_36
22.7
MONOCYTES_37
22.5
MONOCYTES_38
22.4
MONOCYTES_39
22.3
MONOCYTES_40
22.3
MONOCYTES_41
22.2
MONOCYTES_42
22.1
MONOCYTES_43
22.0
MONOCYTES_44
21.9
MONOCYTES_45
21.9
MONOCYTES_46
21.6
MONOCYTES_47
21.6
MONOCYTES_48
21.4
MONOCYTES_49
21.4
MONOCYTES_50
21.2
MONOCYTES_51
21.2
MONOCYTES_52
21.0
MONOCYTES_53
21.0
MONOCYTES_54
20.9
MONOCYTES_55
20.9
MONOCYTES_56
20.6
MONOCYTES_57
20.3
MONOCYTES_58
20.3
MONOCYTES_59
20.3
MONOCYTES_60
20.2
MONOCYTES_61
20.2
MONOCYTES_62
20.2
MONOCYTES_63
20.2
MONOCYTES_64
20.0
MONOCYTES_65
19.9
MONOCYTES_66
19.6
MONOCYTES_67
19.2
MONOCYTES_68
18.9
MONOCYTES_69
18.8
MONOCYTES_70
18.6
MONOCYTES_71
18.6
MONOCYTES_72
18.5
MONOCYTES_73
18.4
MONOCYTES_74
18.3
MONOCYTES_75
18.2
MONOCYTES_76
18.1
MONOCYTES_77
18.0
MONOCYTES_78
17.9
MONOCYTES_79
17.7
MONOCYTES_80
17.7
MONOCYTES_81
17.7
MONOCYTES_82
17.6
MONOCYTES_83
17.3
MONOCYTES_84
16.9
MONOCYTES_85
16.9
MONOCYTES_86
16.9
MONOCYTES_87
16.8
MONOCYTES_88
16.8
MONOCYTES_89
16.8
MONOCYTES_90
15.2
MONOCYTES_91
14.0
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Non-classical monocyte TPM: 30.5
Samples: 90
Max TPM: 43.4
Min TPM: 22.5
M2_1
43.4
M2_2
42.8
M2_3
41.3
M2_4
40.8
M2_5
39.9
M2_6
39.5
M2_7
39.2
M2_8
39.0
M2_9
38.9
M2_10
38.8
M2_11
38.8
M2_12
38.0
M2_13
37.5
M2_14
36.9
M2_15
36.0
M2_16
34.9
M2_17
34.4
M2_18
34.3
M2_19
34.0
M2_20
33.8
M2_21
33.2
M2_22
33.1
M2_23
33.1
M2_24
32.7
M2_25
32.6
M2_26
32.3
M2_27
32.2
M2_28
32.2
M2_29
32.1
M2_30
32.0
M2_31
31.4
M2_32
31.3
M2_33
31.2
M2_34
31.1
M2_35
31.1
M2_36
31.1
M2_37
30.7
M2_38
30.7
M2_39
30.7
M2_40
30.7
M2_41
30.6
M2_42
30.5
M2_43
30.4
M2_44
30.2
M2_45
30.0
M2_46
29.9
M2_47
29.8
M2_48
29.7
M2_49
29.7
M2_50
29.2
M2_51
29.1
M2_52
29.1
M2_53
29.1
M2_54
29.1
M2_55
29.0
M2_56
28.8
M2_57
28.6
M2_58
28.5
M2_59
28.4
M2_60
28.3
M2_61
28.2
M2_62
28.1
M2_63
27.8
M2_64
27.7
M2_65
27.3
M2_66
27.1
M2_67
26.7
M2_68
26.7
M2_69
26.3
M2_70
26.3
M2_71
26.0
M2_72
26.0
M2_73
25.8
M2_74
25.6
M2_75
25.5
M2_76
25.3
M2_77
25.1
M2_78
24.6
M2_79
24.5
M2_80
24.2
M2_81
24.1
M2_82
24.1
M2_83
23.7
M2_84
23.7
M2_85
23.6
M2_86
23.5
M2_87
23.5
M2_88
22.9
M2_89
22.8
M2_90
22.5
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