A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
48.7
nTPM
Schmiedel:
59.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.1
HPA sample
nTPM
Classical monocyte nTPM: 12.2
Samples: 6
Max nTPM: 16.9
Min nTPM: 8.3
P10809_1003
16.9
P10809_1020
14.4
P10809_1039
13.4
P10809_1058
9.2
P10809_1080
8.3
P10809_1107
10.8
Intermediate monocyte nTPM: 13.1
Samples: 6
Max nTPM: 20.2
Min nTPM: 7.4
P10809_1004
11.0
P10809_1023
19.2
P10809_1042
13.2
P10809_1061
20.2
P10809_1081
7.8
P10809_1108
7.4
Non-classical monocyte nTPM: 10.2
Samples: 5
Max nTPM: 14.9
Min nTPM: 5.9
P10809_1005
14.9
P10809_1053
13.8
P10809_1072
6.0
P10809_1082
5.9
P10809_1109
10.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.7
Monaco sample
nTPM
Classical monocyte nTPM: 48.7
Samples: 4
Max nTPM: 56.4
Min nTPM: 40.8
RHH5313_R3680
40.8
RHH5221_R3593
48.4
RHH5250_R3622
56.4
RHH5279_R3651
49.2
Intermediate monocyte nTPM: 39.2
Samples: 4
Max nTPM: 47.7
Min nTPM: 28.9
RHH5314_R3681
44.1
RHH5222_R3594
47.7
RHH5251_R3623
28.9
RHH5280_R3652
36.1
Non-classical monocyte nTPM: 47.9
Samples: 4
Max nTPM: 51.2
Min nTPM: 45.8
RHH5315_R3682
47.5
RHH5223_R3595
51.2
RHH5252_R3624
45.8
RHH5281_R3653
46.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.4
Schmiedel sample id
TPM
Classical monocyte TPM: 48.7
Samples: 91
Max TPM: 68.6
Min TPM: 37.7
MONOCYTES_1
68.6
MONOCYTES_2
65.3
MONOCYTES_3
62.9
MONOCYTES_4
59.1
MONOCYTES_5
59.0
MONOCYTES_6
58.9
MONOCYTES_7
58.8
MONOCYTES_8
58.8
MONOCYTES_9
58.1
MONOCYTES_10
57.6
MONOCYTES_11
55.3
MONOCYTES_12
54.9
MONOCYTES_13
54.7
MONOCYTES_14
54.4
MONOCYTES_15
54.1
MONOCYTES_16
53.9
MONOCYTES_17
53.9
MONOCYTES_18
53.8
MONOCYTES_19
53.7
MONOCYTES_20
53.6
MONOCYTES_21
53.1
MONOCYTES_22
53.1
MONOCYTES_23
53.1
MONOCYTES_24
52.9
MONOCYTES_25
52.7
MONOCYTES_26
50.8
MONOCYTES_27
50.5
MONOCYTES_28
50.1
MONOCYTES_29
50.0
MONOCYTES_30
50.0
MONOCYTES_31
49.6
MONOCYTES_32
49.4
MONOCYTES_33
49.3
MONOCYTES_34
49.3
MONOCYTES_35
49.1
MONOCYTES_36
49.1
MONOCYTES_37
49.1
MONOCYTES_38
49.0
MONOCYTES_39
48.9
MONOCYTES_40
48.7
MONOCYTES_41
48.3
MONOCYTES_42
48.3
MONOCYTES_43
48.2
MONOCYTES_44
48.2
MONOCYTES_45
48.2
MONOCYTES_46
48.1
MONOCYTES_47
48.0
MONOCYTES_48
47.9
MONOCYTES_49
47.9
MONOCYTES_50
47.8
MONOCYTES_51
47.1
MONOCYTES_52
47.0
MONOCYTES_53
46.9
MONOCYTES_54
46.6
MONOCYTES_55
46.3
MONOCYTES_56
46.2
MONOCYTES_57
46.1
MONOCYTES_58
45.8
MONOCYTES_59
45.8
MONOCYTES_60
45.7
MONOCYTES_61
45.7
MONOCYTES_62
45.7
MONOCYTES_63
45.5
MONOCYTES_64
45.5
MONOCYTES_65
45.5
MONOCYTES_66
45.0
MONOCYTES_67
44.9
MONOCYTES_68
44.8
MONOCYTES_69
44.5
MONOCYTES_70
44.4
MONOCYTES_71
44.3
MONOCYTES_72
44.0
MONOCYTES_73
43.9
MONOCYTES_74
43.9
MONOCYTES_75
43.9
MONOCYTES_76
43.4
MONOCYTES_77
43.0
MONOCYTES_78
43.0
MONOCYTES_79
42.9
MONOCYTES_80
42.8
MONOCYTES_81
42.8
MONOCYTES_82
42.7
MONOCYTES_83
42.1
MONOCYTES_84
41.6
MONOCYTES_85
41.2
MONOCYTES_86
40.1
MONOCYTES_87
39.4
MONOCYTES_88
38.9
MONOCYTES_89
38.2
MONOCYTES_90
38.1
MONOCYTES_91
37.7
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Non-classical monocyte TPM: 59.4
Samples: 90
Max TPM: 126.6
Min TPM: 46.4
M2_1
126.6
M2_2
74.3
M2_3
73.4
M2_4
72.5
M2_5
71.6
M2_6
71.4
M2_7
70.1
M2_8
69.2
M2_9
68.1
M2_10
67.4
M2_11
66.9
M2_12
65.1
M2_13
65.1
M2_14
64.5
M2_15
64.4
M2_16
64.3
M2_17
64.3
M2_18
64.2
M2_19
64.1
M2_20
63.7
M2_21
63.7
M2_22
62.9
M2_23
62.9
M2_24
62.7
M2_25
62.6
M2_26
62.5
M2_27
62.2
M2_28
62.1
M2_29
62.1
M2_30
62.0
M2_31
61.8
M2_32
61.7
M2_33
61.2
M2_34
61.1
M2_35
60.6
M2_36
60.3
M2_37
60.3
M2_38
60.2
M2_39
60.1
M2_40
60.0
M2_41
59.9
M2_42
59.8
M2_43
59.8
M2_44
59.3
M2_45
58.7
M2_46
58.6
M2_47
58.2
M2_48
58.1
M2_49
57.7
M2_50
57.7
M2_51
57.4
M2_52
57.3
M2_53
57.2
M2_54
55.9
M2_55
55.4
M2_56
55.0
M2_57
55.0
M2_58
54.8
M2_59
54.6
M2_60
54.6
M2_61
54.3
M2_62
54.2
M2_63
54.1
M2_64
54.0
M2_65
53.9
M2_66
53.9
M2_67
53.8
M2_68
53.7
M2_69
53.6
M2_70
53.5
M2_71
53.1
M2_72
53.0
M2_73
52.9
M2_74
52.9
M2_75
52.8
M2_76
52.1
M2_77
52.1
M2_78
51.7
M2_79
51.6
M2_80
51.2
M2_81
51.2
M2_82
50.8
M2_83
50.8
M2_84
50.6
M2_85
50.5
M2_86
50.2
M2_87
50.0
M2_88
49.4
M2_89
48.5
M2_90
46.4
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