A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.4
nTPM
Monaco:
24.7
nTPM
Schmiedel:
16.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.4
HPA sample
nTPM
Classical monocyte nTPM: 8.5
Samples: 6
Max nTPM: 15.2
Min nTPM: 6.3
P10809_1003
15.2
P10809_1020
7.7
P10809_1039
6.9
P10809_1058
6.9
P10809_1080
6.3
P10809_1107
7.7
Intermediate monocyte nTPM: 5.5
Samples: 6
Max nTPM: 9.4
Min nTPM: 3.1
P10809_1004
3.4
P10809_1023
9.4
P10809_1042
3.6
P10809_1061
4.8
P10809_1081
3.1
P10809_1108
8.8
Non-classical monocyte nTPM: 5.6
Samples: 5
Max nTPM: 8.4
Min nTPM: 2.2
P10809_1005
6.7
P10809_1053
3.8
P10809_1072
8.4
P10809_1082
2.2
P10809_1109
6.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.7
Monaco sample
nTPM
Classical monocyte nTPM: 24.7
Samples: 4
Max nTPM: 29.6
Min nTPM: 18.0
RHH5313_R3680
29.6
RHH5221_R3593
25.1
RHH5250_R3622
18.0
RHH5279_R3651
26.1
Intermediate monocyte nTPM: 15.8
Samples: 4
Max nTPM: 24.7
Min nTPM: 11.6
RHH5314_R3681
11.6
RHH5222_R3594
24.7
RHH5251_R3623
11.6
RHH5280_R3652
15.2
Non-classical monocyte nTPM: 14.1
Samples: 4
Max nTPM: 22.4
Min nTPM: 10.1
RHH5315_R3682
22.4
RHH5223_R3595
11.6
RHH5252_R3624
12.1
RHH5281_R3653
10.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.4
Schmiedel sample id
TPM
Classical monocyte TPM: 16.4
Samples: 91
Max TPM: 26.1
Min TPM: 7.9
MONOCYTES_1
26.1
MONOCYTES_2
25.5
MONOCYTES_3
24.6
MONOCYTES_4
24.0
MONOCYTES_5
23.4
MONOCYTES_6
23.4
MONOCYTES_7
23.4
MONOCYTES_8
23.4
MONOCYTES_9
23.3
MONOCYTES_10
22.7
MONOCYTES_11
22.5
MONOCYTES_12
22.3
MONOCYTES_13
21.9
MONOCYTES_14
21.6
MONOCYTES_15
21.5
MONOCYTES_16
21.4
MONOCYTES_17
21.0
MONOCYTES_18
20.8
MONOCYTES_19
20.8
MONOCYTES_20
20.4
MONOCYTES_21
20.0
MONOCYTES_22
19.5
MONOCYTES_23
19.5
MONOCYTES_24
19.2
MONOCYTES_25
19.2
MONOCYTES_26
18.8
MONOCYTES_27
18.2
MONOCYTES_28
18.1
MONOCYTES_29
18.1
MONOCYTES_30
18.0
MONOCYTES_31
18.0
MONOCYTES_32
17.7
MONOCYTES_33
17.5
MONOCYTES_34
17.0
MONOCYTES_35
16.7
MONOCYTES_36
16.7
MONOCYTES_37
16.7
MONOCYTES_38
16.7
MONOCYTES_39
16.6
MONOCYTES_40
16.5
MONOCYTES_41
16.4
MONOCYTES_42
16.3
MONOCYTES_43
16.2
MONOCYTES_44
16.1
MONOCYTES_45
16.0
MONOCYTES_46
16.0
MONOCYTES_47
15.9
MONOCYTES_48
15.7
MONOCYTES_49
15.7
MONOCYTES_50
15.6
MONOCYTES_51
15.5
MONOCYTES_52
15.1
MONOCYTES_53
15.0
MONOCYTES_54
14.9
MONOCYTES_55
14.8
MONOCYTES_56
14.7
MONOCYTES_57
14.6
MONOCYTES_58
14.6
MONOCYTES_59
14.6
MONOCYTES_60
14.5
MONOCYTES_61
14.4
MONOCYTES_62
14.4
MONOCYTES_63
14.2
MONOCYTES_64
14.2
MONOCYTES_65
14.0
MONOCYTES_66
13.9
MONOCYTES_67
13.8
MONOCYTES_68
13.7
MONOCYTES_69
13.4
MONOCYTES_70
13.3
MONOCYTES_71
13.2
MONOCYTES_72
13.1
MONOCYTES_73
12.8
MONOCYTES_74
12.7
MONOCYTES_75
12.5
MONOCYTES_76
12.5
MONOCYTES_77
12.5
MONOCYTES_78
12.1
MONOCYTES_79
12.1
MONOCYTES_80
11.5
MONOCYTES_81
11.3
MONOCYTES_82
11.2
MONOCYTES_83
11.0
MONOCYTES_84
10.9
MONOCYTES_85
10.6
MONOCYTES_86
9.9
MONOCYTES_87
9.6
MONOCYTES_88
9.2
MONOCYTES_89
9.0
MONOCYTES_90
8.4
MONOCYTES_91
7.9
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Non-classical monocyte TPM: 8.4
Samples: 90
Max TPM: 13.8
Min TPM: 2.6
M2_1
13.8
M2_2
13.3
M2_3
13.1
M2_4
13.0
M2_5
12.8
M2_6
12.8
M2_7
12.1
M2_8
12.1
M2_9
12.1
M2_10
12.0
M2_11
12.0
M2_12
12.0
M2_13
11.9
M2_14
11.8
M2_15
11.8
M2_16
11.5
M2_17
11.2
M2_18
11.2
M2_19
10.9
M2_20
10.8
M2_21
10.8
M2_22
10.8
M2_23
10.7
M2_24
10.6
M2_25
10.4
M2_26
10.3
M2_27
10.1
M2_28
10.0
M2_29
10.0
M2_30
9.9
M2_31
9.9
M2_32
9.8
M2_33
9.8
M2_34
9.5
M2_35
9.5
M2_36
9.4
M2_37
9.4
M2_38
9.2
M2_39
8.8
M2_40
8.8
M2_41
8.8
M2_42
8.7
M2_43
8.5
M2_44
8.5
M2_45
8.5
M2_46
8.5
M2_47
8.2
M2_48
7.9
M2_49
7.9
M2_50
7.9
M2_51
7.8
M2_52
7.8
M2_53
7.7
M2_54
7.6
M2_55
7.5
M2_56
7.5
M2_57
7.4
M2_58
7.3
M2_59
7.2
M2_60
7.2
M2_61
7.1
M2_62
7.1
M2_63
7.1
M2_64
6.6
M2_65
6.6
M2_66
6.3
M2_67
6.2
M2_68
6.2
M2_69
6.0
M2_70
5.8
M2_71
5.7
M2_72
5.6
M2_73
5.4
M2_74
5.2
M2_75
5.1
M2_76
5.1
M2_77
5.1
M2_78
5.1
M2_79
5.0
M2_80
4.9
M2_81
4.8
M2_82
4.6
M2_83
4.5
M2_84
4.4
M2_85
3.9
M2_86
3.9
M2_87
3.4
M2_88
3.4
M2_89
3.3
M2_90
2.6
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