A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.5
nTPM
Monaco:
122.8
nTPM
Schmiedel:
55.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.5
HPA sample
nTPM
Classical monocyte nTPM: 27.5
Samples: 6
Max nTPM: 46.2
Min nTPM: 16.3
P10809_1003
46.2
P10809_1020
24.1
P10809_1039
16.3
P10809_1058
19.9
P10809_1080
29.2
P10809_1107
29.1
Intermediate monocyte nTPM: 15.3
Samples: 6
Max nTPM: 20.5
Min nTPM: 11.9
P10809_1004
20.5
P10809_1023
12.3
P10809_1042
12.5
P10809_1061
16.5
P10809_1081
18.2
P10809_1108
11.9
Non-classical monocyte nTPM: 12.3
Samples: 5
Max nTPM: 18.5
Min nTPM: 7.5
P10809_1005
18.5
P10809_1053
8.7
P10809_1072
7.5
P10809_1082
9.3
P10809_1109
17.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.8
Monaco sample
nTPM
Classical monocyte nTPM: 122.8
Samples: 4
Max nTPM: 147.4
Min nTPM: 111.3
RHH5313_R3680
147.4
RHH5221_R3593
111.3
RHH5250_R3622
118.3
RHH5279_R3651
114.3
Intermediate monocyte nTPM: 73.6
Samples: 4
Max nTPM: 87.2
Min nTPM: 56.2
RHH5314_R3681
77.0
RHH5222_R3594
87.2
RHH5251_R3623
73.8
RHH5280_R3652
56.2
Non-classical monocyte nTPM: 52.2
Samples: 4
Max nTPM: 62.6
Min nTPM: 41.5
RHH5315_R3682
62.6
RHH5223_R3595
41.5
RHH5252_R3624
51.7
RHH5281_R3653
53.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.5
Schmiedel sample id
TPM
Classical monocyte TPM: 55.5
Samples: 91
Max TPM: 94.3
Min TPM: 22.4
MONOCYTES_1
94.3
MONOCYTES_2
93.1
MONOCYTES_3
86.2
MONOCYTES_4
85.3
MONOCYTES_5
84.6
MONOCYTES_6
83.6
MONOCYTES_7
81.5
MONOCYTES_8
78.7
MONOCYTES_9
76.9
MONOCYTES_10
76.1
MONOCYTES_11
74.7
MONOCYTES_12
72.2
MONOCYTES_13
71.9
MONOCYTES_14
70.8
MONOCYTES_15
68.9
MONOCYTES_16
68.8
MONOCYTES_17
68.8
MONOCYTES_18
67.3
MONOCYTES_19
65.5
MONOCYTES_20
65.3
MONOCYTES_21
65.3
MONOCYTES_22
64.7
MONOCYTES_23
64.4
MONOCYTES_24
63.5
MONOCYTES_25
62.3
MONOCYTES_26
61.2
MONOCYTES_27
61.1
MONOCYTES_28
60.9
MONOCYTES_29
60.8
MONOCYTES_30
60.4
MONOCYTES_31
59.7
MONOCYTES_32
59.5
MONOCYTES_33
59.2
MONOCYTES_34
59.1
MONOCYTES_35
58.9
MONOCYTES_36
58.8
MONOCYTES_37
58.4
MONOCYTES_38
58.1
MONOCYTES_39
57.5
MONOCYTES_40
57.3
MONOCYTES_41
56.9
MONOCYTES_42
55.7
MONOCYTES_43
55.5
MONOCYTES_44
54.8
MONOCYTES_45
54.7
MONOCYTES_46
54.0
MONOCYTES_47
53.7
MONOCYTES_48
53.5
MONOCYTES_49
53.3
MONOCYTES_50
52.7
MONOCYTES_51
52.3
MONOCYTES_52
51.9
MONOCYTES_53
51.4
MONOCYTES_54
51.2
MONOCYTES_55
50.6
MONOCYTES_56
50.2
MONOCYTES_57
49.1
MONOCYTES_58
48.3
MONOCYTES_59
48.1
MONOCYTES_60
47.3
MONOCYTES_61
47.2
MONOCYTES_62
47.0
MONOCYTES_63
46.8
MONOCYTES_64
46.7
MONOCYTES_65
46.6
MONOCYTES_66
46.2
MONOCYTES_67
46.2
MONOCYTES_68
46.2
MONOCYTES_69
45.7
MONOCYTES_70
45.0
MONOCYTES_71
44.7
MONOCYTES_72
44.2
MONOCYTES_73
43.9
MONOCYTES_74
43.6
MONOCYTES_75
42.8
MONOCYTES_76
42.3
MONOCYTES_77
40.8
MONOCYTES_78
40.6
MONOCYTES_79
40.3
MONOCYTES_80
39.6
MONOCYTES_81
39.3
MONOCYTES_82
37.4
MONOCYTES_83
36.9
MONOCYTES_84
36.2
MONOCYTES_85
35.3
MONOCYTES_86
35.3
MONOCYTES_87
35.3
MONOCYTES_88
34.8
MONOCYTES_89
33.5
MONOCYTES_90
31.4
MONOCYTES_91
22.4
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Non-classical monocyte TPM: 24.5
Samples: 90
Max TPM: 47.2
Min TPM: 8.8
M2_1
47.2
M2_2
45.3
M2_3
44.6
M2_4
43.0
M2_5
42.8
M2_6
38.3
M2_7
37.8
M2_8
37.7
M2_9
37.0
M2_10
35.9
M2_11
35.3
M2_12
35.2
M2_13
33.7
M2_14
32.9
M2_15
32.8
M2_16
32.7
M2_17
32.6
M2_18
32.3
M2_19
32.3
M2_20
32.0
M2_21
31.1
M2_22
31.0
M2_23
31.0
M2_24
29.8
M2_25
29.7
M2_26
29.2
M2_27
28.9
M2_28
28.8
M2_29
28.7
M2_30
28.3
M2_31
28.2
M2_32
27.6
M2_33
27.4
M2_34
26.8
M2_35
26.4
M2_36
26.1
M2_37
25.6
M2_38
25.4
M2_39
24.8
M2_40
24.6
M2_41
24.1
M2_42
23.4
M2_43
23.2
M2_44
22.9
M2_45
22.9
M2_46
22.8
M2_47
22.7
M2_48
22.2
M2_49
22.1
M2_50
21.9
M2_51
21.9
M2_52
21.8
M2_53
21.7
M2_54
21.7
M2_55
21.6
M2_56
21.5
M2_57
21.5
M2_58
21.4
M2_59
20.9
M2_60
20.6
M2_61
20.2
M2_62
19.8
M2_63
19.7
M2_64
19.7
M2_65
18.4
M2_66
18.1
M2_67
17.8
M2_68
17.7
M2_69
17.7
M2_70
17.4
M2_71
17.1
M2_72
17.0
M2_73
16.9
M2_74
16.8
M2_75
16.6
M2_76
16.6
M2_77
16.3
M2_78
16.0
M2_79
14.9
M2_80
13.6
M2_81
13.0
M2_82
12.5
M2_83
12.2
M2_84
12.1
M2_85
11.8
M2_86
11.5
M2_87
10.5
M2_88
9.6
M2_89
9.3
M2_90
8.8
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