On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
High
Inner plexiform layer:
High
Limiting membrane:
High
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB080582
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
High
Outer plexiform layer
High
Inner nuclear layer
High
Inner plexiform layer
High
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 20.0
Samples: 105
Max nTPM: 68.4
Min nTPM: 2.7
Std nTPM: 13.0
Median nTPM:
218_1
71 years, female
68.4
356_1
87 years, female
56.9
354_1
81 years, female
54.4
353_1
82 years, female
48.5
352_1
62 years, male
48.4
319_1
81 years, male
42.2
351_1
91 years, male
41.6
172_1
72 years, female
41.1
320_1
89 years, female
39.5
452_1
88 years, female
39.4
163_1
78 years, male
37.2
349_1
83 years, male
36.4
506_1
65 years, male
34.8
350_1
84 years, female
33.6
355_1
70 years, female
32.4
384_1
83 years, male
32.1
237_1
82 years, male
31.2
99_1
64 years, male
31.0
321_1
62 years, female
30.9
286_1
68 years, female
30.7
379_1
60 years, male
30.4
295_1
61 years, female
29.8
322_1
76 years, male
29.8
293_1
68 years, female
28.9
394_1
75 years, female
28.2
386_1
76 years, male
28.0
377_1
82 years, female
27.4
292_1
71 years, male
26.0
335_1
73 years, female
25.8
41_1
94 years, female
25.7
317_1
60 years, male
25.3
243_1
75 years, male
25.2
447_1
81 years, male
24.7
318_1
68 years, male
24.5
376_1
75 years, female
24.3
347_1
72 years, male
24.1
503_1
68 years, male
23.8
177_1
74 years, male
22.9
6_1
73 years, female
22.2
4_1
88 years, female
21.9
173_1
67 years, male
21.6
375_1
74 years, female
21.6
251_1
78 years, male
21.4
229_1
69 years, female
21.3
348_1
84 years, male
20.7
291_1
76 years, male
20.3
404_1
82 years, female
19.7
264_1
73 years, female
19.3
405_1
91 years, male
18.8
406_1
79 years, male
18.7
316_1
62 years, male
18.6
480_1
63 years, male
18.6
115_1
83 years, male
18.2
396_1
62 years, male
18.0
425_1
59 years, female
17.6
526_1
61 years, male
17.4
389_1
86 years, female
17.3
517_1
88 years, male
17.2
311_1
78 years, male
16.2
9_1
66 years, female
15.7
189_1
76 years, male
15.1
35_1
74 years, female
14.8
2_1
77 years, female
13.3
153_1
70 years, female
13.0
468_1
89 years, male
12.8
18_1
88 years, male
12.7
137_1
83 years, male
12.7
254_1
77 years, female
12.7
518_1
75 years, female
12.7
145_1
84 years, male
12.5
266_1
85 years, male
12.5
265_1
87 years, male
12.0
109_1
81 years, female
11.9
42_1
85 years, male
11.3
217_1
76 years, male
11.1
288_1
66 years, female
10.9
17_1
71 years, male
10.6
314_1
67 years, male
10.5
120_1
70 years, female
10.3
307_1
66 years, female
10.3
117_1
61 years, male
10.1
246_1
77 years, male
10.0
324_1
76 years, male
9.6
162_1
79 years, female
9.5
126_1
63 years, male
9.3
119_1
70 years, female
8.4
315_1
62 years, female
8.3
81_1
67 years, male
6.9
313_1
79 years, female
6.6
139_1
64 years, female
6.3
308_1
70 years, female
5.5
142_1
61 years, female
5.2
414_1
84 years, female
5.1
495_1
57 years, female
4.9
499_1
55 years, female
4.9
89_1
63 years, male
4.7
32_1
67 years, male
4.3
149_1
88 years, male
4.0
466_1
57 years, female
3.7
43_1
64 years, female
3.4
413_1
59 years, female
2.8
501_1
88 years, male
2.8
415_1
77 years, female
2.7
490_1
67 years, female
2.7
491_1
89 years, female
2.7
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.2
Macaque sample
Sample description
nTPM
Retina nTPM: 24.2
Samples: 2
Max nTPM: 27.6
Min nTPM: 20.7
Sample A
20.7
Sample B
27.6
RETINA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.1
Pig sample
Sample description
nTPM
Retina nTPM: 25.0
Samples: 4
Max nTPM: 32.4
Min nTPM: 21.4
Sample A
Female
23.9
Sample B
Female
21.4
Sample C
Male
32.4
Sample D
Male
22.5
RETINA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.4
Mouse sample
Sample description
nTPM
Retina nTPM: 41.4
Samples: 3
Max nTPM: 46.1
Min nTPM: 36.6
Sample D
36.6
Sample B
46.1
Sample C
41.5
RETINA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.1
Rat sample
Sample description
nTPM
Retina nTPM: 57.1
Samples: 4
Max nTPM: 63.1
Min nTPM: 54.6
Sample B
54.6
Sample A
63.1
Sample A
54.6
Sample A
56.2
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