BETA
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:33.8 nTPM
GTEx:29.7 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Macaque:34.9 nTPM
Mouse:67.7 nTPM
Rat:45.2 nTPM
Pig:91.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035450Antibody HPA035451
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 1534
Sample Intensity
Hippocampal formation_01
 ND
Hippocampal formation_02
 1507
Hippocampal formation_03
 ND
Hippocampal formation_04
 ND
Hippocampal formation_05
 1534
Hippocampal formation_06
 1758

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 33.8
Sample id Sample description nTPM
Dentate gyrus
nTPM: 26.0
2010 Male, age 76, both hemispheres 29.0
2530 Female, age 94, left hemisphere 27.8
1927 Female, age 91, both hemispheres 26.1
2531 Female, age 67, both hemispheres 25.6
2246 Female, age 85, both hemispheres 24.9
2528 Male, age 74, both hemispheres 22.6
Entorhinal gyrus
nTPM: 28.3
2764 Male, age 80, right hemisphere 33.3
1938 Female, age 85, left hemisphere 30.3
2686 Male, age 75, right hemisphere 27.8
2613 Female, age 94, left hemisphere 26.9
2117 Female, age 91, right hemisphere 26.1
1787 Male, age 76, left hemisphere 25.7
Hippocampus, CA1
nTPM: 29.6
2045 Male, age 76, both hemispheres 35.2
2749 Male, age 80, left hemisphere 33.9
1873 Female, age 85, both hemispheres 29.6
2527 Male, age 74, both hemispheres 29.1
2082 Female, age 91, right hemisphere 20.3
Hippocampus, CA2
nTPM: 29.6
2249 Male, age 74, both hemispheres 35.8
2437 Female, age 94, left hemisphere 32.2
1963 Male, age 80, left hemisphere 29.3
1892 Male, age 76, both hemispheres 28.6
1940 Female, age 85, left hemisphere 26.1
2113 Female, age 91, right hemisphere 25.6
Hippocampus, CA3
nTPM: 33.8
2436 Male, age 74, both hemispheres 60.5
2137 Male, age 80, left hemisphere 32.4
2620 Female, age 94, left hemisphere 28.9
2861 Female, age 67, both hemispheres 27.3
1891 Female, age 85, both hemispheres 27.0
1867 Male, age 76, both hemispheres 26.7
Parahippocampal cortex
nTPM: 28.4
1850 Male, age 80, both hemispheres 34.2
1933 Female, age 85, both hemispheres 30.6
2018 Male, age 76, both hemispheres 30.6
2250 Female, age 67, right hemisphere 29.1
2692 Male, age 74, both hemispheres 28.7
2622 Female, age 67, right hemisphere 28.0
1990 Female, age 91, right hemisphere 27.5
2532 Female, age 72, left hemisphere 27.2
2245 Female, age 91, both hemispheres 25.3
2693 Female, age 94, both hemispheres 23.2
Perirhinal gyrus
nTPM: 29.9
1794 Male, age 80, right hemisphere 32.7
1841 Female, age 85, right hemisphere 31.8
1847 Female, age 91, left hemisphere 31.3
2521 Female, age 94, right hemisphere 28.2
2848 Male, age 76, right hemisphere 25.5
Subiculum
nTPM: 27.2
2619 Male, age 74, both hemispheres 30.5
2438 Female, age 94, left hemisphere 29.7
1977 Female, age 85, both hemispheres 27.0
2042 Male, age 76, both hemispheres 26.4
1901 Male, age 80, both hemispheres 26.1
2729 Female, age 91, right hemisphere 23.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.7
Samples: 255

Max nTPM: 59.8
Min nTPM: 14.4
Std nTPM: 6.2
Median nTPM: 29.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 59.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 54.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 47.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 46.2
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 45.9
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 42.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 42.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 42.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 42.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 41.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 41.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.1
FF:10169-103B7 60 years, female 33.2
FF:10153-102I9 76 years, female 33.1

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi 34.9
Macaque sample Sample description nTPM
Subiculum
nTPM: 30.7
Samples: 1

Max nTPM: 30.7
Min nTPM: 30.7
Sample A 30.7
Entorhinal cortex
nTPM: 34.1
Samples: 2

Max nTPM: 34.7
Min nTPM: 33.4
Sample A 33.4
Sample B 34.7
Hippocampal formation
nTPM: 34.9
Samples: 4

Max nTPM: 37.4
Min nTPM: 32.8
Sample A 34.1
Sample B 32.8
Sample C 35.2
Sample D 37.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 91.2
Pig sample Sample description nTPM
Subiculum
nTPM: 77.0
Samples: 4

Max nTPM: 96.2
Min nTPM: 66.3
Sample A Female 96.2
Sample B Female 69.0
Sample C Male 76.5
Sample D Male 66.3
Dorsal hippocampus
nTPM: 91.2
Samples: 4

Max nTPM: 117.7
Min nTPM: 73.4
Sample A Female 117.7
Sample B Female 80.2
Sample C Male 93.5
Sample D Male 73.4
Entorhinal cortex
nTPM: 81.7
Samples: 4

Max nTPM: 87.1
Min nTPM: 69.0
Sample A Female 86.3
Sample B Female 87.1
Sample C Male 84.4
Sample D Male 69.0
Ventral hippocampus
nTPM: 85.8
Samples: 4

Max nTPM: 109.0
Min nTPM: 61.1
Sample A Female 84.9
Sample B Female 61.1
Sample C Male 109.0
Sample D Male 88.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 67.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.3
Samples: 4

Max nTPM: 69.5
Min nTPM: 59.0
Sample A 62.6
Sample B 69.5
Sample C 62.2
Sample D 59.0
Hippocampal formation
nTPM: 67.7
Samples: 4

Max nTPM: 81.3
Min nTPM: 56.5
Sample A 81.3
Sample B 63.1
Sample C 56.5
Sample D 69.9

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi 45.2
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 38.3
Samples: 4

Max nTPM: 44.0
Min nTPM: 33.3
Sample A 44.0
Sample A 40.3
Sample A 33.3
Sample B 35.7
Ventral hippocampus
nTPM: 45.2
Samples: 4

Max nTPM: 51.5
Min nTPM: 34.1
Sample A 49.7
Sample A 34.1
Sample A 51.5
Sample A 45.6

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