A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
69.9
nTPM
Monaco:
47.7
nTPM
Schmiedel:
10.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.9
HPA sample
nTPM
Classical monocyte nTPM: 69.9
Samples: 6
Max nTPM: 87.4
Min nTPM: 44.0
P10809_1003
44.0
P10809_1020
75.2
P10809_1039
87.4
P10809_1058
61.3
P10809_1080
70.5
P10809_1107
81.2
Intermediate monocyte nTPM: 60.9
Samples: 6
Max nTPM: 88.5
Min nTPM: 45.8
P10809_1004
52.4
P10809_1023
45.8
P10809_1042
57.8
P10809_1061
54.5
P10809_1081
66.5
P10809_1108
88.5
Non-classical monocyte nTPM: 45.4
Samples: 5
Max nTPM: 56.5
Min nTPM: 31.4
P10809_1005
31.4
P10809_1053
52.7
P10809_1072
48.8
P10809_1082
37.4
P10809_1109
56.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.7
Monaco sample
nTPM
Classical monocyte nTPM: 47.7
Samples: 4
Max nTPM: 58.7
Min nTPM: 38.7
RHH5313_R3680
58.7
RHH5221_R3593
38.7
RHH5250_R3622
40.5
RHH5279_R3651
52.8
Intermediate monocyte nTPM: 40.8
Samples: 4
Max nTPM: 45.3
Min nTPM: 33.8
RHH5314_R3681
44.9
RHH5222_R3594
39.0
RHH5251_R3623
33.8
RHH5280_R3652
45.3
Non-classical monocyte nTPM: 23.7
Samples: 4
Max nTPM: 27.6
Min nTPM: 21.9
RHH5315_R3682
22.6
RHH5223_R3595
21.9
RHH5252_R3624
22.8
RHH5281_R3653
27.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.9
Schmiedel sample id
TPM
Classical monocyte TPM: 10.9
Samples: 91
Max TPM: 17.0
Min TPM: 5.2
MONOCYTES_1
17.0
MONOCYTES_2
15.3
MONOCYTES_3
14.5
MONOCYTES_4
14.3
MONOCYTES_5
14.3
MONOCYTES_6
14.2
MONOCYTES_7
14.2
MONOCYTES_8
14.1
MONOCYTES_9
14.0
MONOCYTES_10
13.7
MONOCYTES_11
13.6
MONOCYTES_12
13.6
MONOCYTES_13
13.5
MONOCYTES_14
13.5
MONOCYTES_15
13.3
MONOCYTES_16
13.1
MONOCYTES_17
13.0
MONOCYTES_18
12.9
MONOCYTES_19
12.8
MONOCYTES_20
12.7
MONOCYTES_21
12.5
MONOCYTES_22
12.5
MONOCYTES_23
12.5
MONOCYTES_24
12.5
MONOCYTES_25
12.4
MONOCYTES_26
12.4
MONOCYTES_27
12.3
MONOCYTES_28
12.3
MONOCYTES_29
12.1
MONOCYTES_30
12.1
MONOCYTES_31
12.0
MONOCYTES_32
12.0
MONOCYTES_33
12.0
MONOCYTES_34
11.9
MONOCYTES_35
11.8
MONOCYTES_36
11.7
MONOCYTES_37
11.6
MONOCYTES_38
11.6
MONOCYTES_39
11.3
MONOCYTES_40
11.3
MONOCYTES_41
11.1
MONOCYTES_42
10.9
MONOCYTES_43
10.9
MONOCYTES_44
10.8
MONOCYTES_45
10.7
MONOCYTES_46
10.6
MONOCYTES_47
10.6
MONOCYTES_48
10.6
MONOCYTES_49
10.5
MONOCYTES_50
10.5
MONOCYTES_51
10.5
MONOCYTES_52
10.4
MONOCYTES_53
10.4
MONOCYTES_54
10.3
MONOCYTES_55
10.2
MONOCYTES_56
10.1
MONOCYTES_57
10.1
MONOCYTES_58
10.0
MONOCYTES_59
9.9
MONOCYTES_60
9.9
MONOCYTES_61
9.9
MONOCYTES_62
9.9
MONOCYTES_63
9.9
MONOCYTES_64
9.7
MONOCYTES_65
9.6
MONOCYTES_66
9.6
MONOCYTES_67
9.5
MONOCYTES_68
9.5
MONOCYTES_69
9.5
MONOCYTES_70
9.2
MONOCYTES_71
9.2
MONOCYTES_72
9.0
MONOCYTES_73
9.0
MONOCYTES_74
9.0
MONOCYTES_75
8.9
MONOCYTES_76
8.7
MONOCYTES_77
8.6
MONOCYTES_78
8.6
MONOCYTES_79
8.4
MONOCYTES_80
8.3
MONOCYTES_81
8.0
MONOCYTES_82
8.0
MONOCYTES_83
7.8
MONOCYTES_84
7.7
MONOCYTES_85
7.6
MONOCYTES_86
7.5
MONOCYTES_87
7.2
MONOCYTES_88
7.0
MONOCYTES_89
6.1
MONOCYTES_90
5.6
MONOCYTES_91
5.2
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Non-classical monocyte TPM: 6.9
Samples: 90
Max TPM: 15.6
Min TPM: 2.6
M2_1
15.6
M2_2
11.5
M2_3
11.4
M2_4
10.3
M2_5
9.8
M2_6
9.7
M2_7
9.4
M2_8
9.2
M2_9
9.1
M2_10
9.1
M2_11
9.0
M2_12
8.9
M2_13
8.9
M2_14
8.8
M2_15
8.7
M2_16
8.6
M2_17
8.5
M2_18
8.5
M2_19
8.5
M2_20
8.5
M2_21
8.4
M2_22
8.3
M2_23
8.2
M2_24
8.0
M2_25
8.0
M2_26
8.0
M2_27
7.7
M2_28
7.7
M2_29
7.7
M2_30
7.6
M2_31
7.6
M2_32
7.6
M2_33
7.6
M2_34
7.5
M2_35
7.5
M2_36
7.3
M2_37
7.3
M2_38
7.3
M2_39
7.3
M2_40
7.2
M2_41
7.2
M2_42
7.1
M2_43
7.1
M2_44
7.1
M2_45
7.0
M2_46
7.0
M2_47
6.9
M2_48
6.9
M2_49
6.8
M2_50
6.7
M2_51
6.7
M2_52
6.5
M2_53
6.5
M2_54
6.3
M2_55
6.3
M2_56
6.0
M2_57
6.0
M2_58
6.0
M2_59
5.9
M2_60
5.9
M2_61
5.7
M2_62
5.7
M2_63
5.7
M2_64
5.6
M2_65
5.6
M2_66
5.5
M2_67
5.4
M2_68
5.4
M2_69
5.3
M2_70
5.3
M2_71
5.2
M2_72
5.1
M2_73
4.9
M2_74
4.9
M2_75
4.9
M2_76
4.9
M2_77
4.8
M2_78
4.8
M2_79
4.8
M2_80
4.7
M2_81
4.7
M2_82
4.3
M2_83
4.0
M2_84
4.0
M2_85
3.8
M2_86
3.7
M2_87
3.7
M2_88
3.6
M2_89
3.6
M2_90
2.6
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