A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.2
nTPM
Monaco:
39.3
nTPM
Schmiedel:
38.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
HPA sample
nTPM
Classical monocyte nTPM: 13.1
Samples: 6
Max nTPM: 16.2
Min nTPM: 10.1
P10809_1003
11.9
P10809_1020
14.1
P10809_1039
16.2
P10809_1058
13.3
P10809_1080
13.0
P10809_1107
10.1
Intermediate monocyte nTPM: 15.7
Samples: 6
Max nTPM: 21.0
Min nTPM: 11.1
P10809_1004
17.3
P10809_1023
18.1
P10809_1042
12.6
P10809_1061
21.0
P10809_1081
14.2
P10809_1108
11.1
Non-classical monocyte nTPM: 18.2
Samples: 5
Max nTPM: 27.5
Min nTPM: 12.9
P10809_1005
16.6
P10809_1053
18.2
P10809_1072
27.5
P10809_1082
15.8
P10809_1109
12.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
Monaco sample
nTPM
Classical monocyte nTPM: 32.6
Samples: 4
Max nTPM: 35.0
Min nTPM: 29.5
RHH5313_R3680
35.0
RHH5221_R3593
29.5
RHH5250_R3622
33.0
RHH5279_R3651
32.7
Intermediate monocyte nTPM: 34.5
Samples: 4
Max nTPM: 49.6
Min nTPM: 24.2
RHH5314_R3681
24.6
RHH5222_R3594
49.6
RHH5251_R3623
24.2
RHH5280_R3652
39.4
Non-classical monocyte nTPM: 39.3
Samples: 4
Max nTPM: 50.3
Min nTPM: 32.9
RHH5315_R3682
32.9
RHH5223_R3595
50.3
RHH5252_R3624
34.7
RHH5281_R3653
39.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.6
Schmiedel sample id
TPM
Classical monocyte TPM: 29.6
Samples: 91
Max TPM: 38.8
Min TPM: 21.9
MONOCYTES_1
38.8
MONOCYTES_2
38.8
MONOCYTES_3
38.7
MONOCYTES_4
37.4
MONOCYTES_5
37.2
MONOCYTES_6
36.9
MONOCYTES_7
36.3
MONOCYTES_8
36.2
MONOCYTES_9
35.7
MONOCYTES_10
35.6
MONOCYTES_11
35.5
MONOCYTES_12
35.5
MONOCYTES_13
35.5
MONOCYTES_14
34.6
MONOCYTES_15
34.5
MONOCYTES_16
34.4
MONOCYTES_17
33.8
MONOCYTES_18
33.3
MONOCYTES_19
33.3
MONOCYTES_20
32.8
MONOCYTES_21
32.8
MONOCYTES_22
32.6
MONOCYTES_23
32.5
MONOCYTES_24
32.2
MONOCYTES_25
32.2
MONOCYTES_26
32.1
MONOCYTES_27
31.8
MONOCYTES_28
31.8
MONOCYTES_29
31.6
MONOCYTES_30
31.6
MONOCYTES_31
31.5
MONOCYTES_32
31.2
MONOCYTES_33
31.2
MONOCYTES_34
31.2
MONOCYTES_35
31.0
MONOCYTES_36
30.9
MONOCYTES_37
30.9
MONOCYTES_38
30.9
MONOCYTES_39
30.8
MONOCYTES_40
30.7
MONOCYTES_41
30.6
MONOCYTES_42
30.5
MONOCYTES_43
29.9
MONOCYTES_44
29.8
MONOCYTES_45
29.7
MONOCYTES_46
29.6
MONOCYTES_47
29.3
MONOCYTES_48
29.0
MONOCYTES_49
28.8
MONOCYTES_50
28.8
MONOCYTES_51
28.6
MONOCYTES_52
28.5
MONOCYTES_53
28.4
MONOCYTES_54
28.3
MONOCYTES_55
28.0
MONOCYTES_56
28.0
MONOCYTES_57
27.9
MONOCYTES_58
27.6
MONOCYTES_59
27.6
MONOCYTES_60
27.6
MONOCYTES_61
27.5
MONOCYTES_62
27.1
MONOCYTES_63
26.8
MONOCYTES_64
26.4
MONOCYTES_65
26.4
MONOCYTES_66
26.3
MONOCYTES_67
26.3
MONOCYTES_68
26.1
MONOCYTES_69
26.1
MONOCYTES_70
26.1
MONOCYTES_71
25.8
MONOCYTES_72
25.5
MONOCYTES_73
25.5
MONOCYTES_74
25.4
MONOCYTES_75
25.3
MONOCYTES_76
25.2
MONOCYTES_77
25.2
MONOCYTES_78
24.8
MONOCYTES_79
24.7
MONOCYTES_80
24.6
MONOCYTES_81
24.4
MONOCYTES_82
24.4
MONOCYTES_83
24.2
MONOCYTES_84
24.1
MONOCYTES_85
24.0
MONOCYTES_86
23.6
MONOCYTES_87
23.2
MONOCYTES_88
23.0
MONOCYTES_89
22.5
MONOCYTES_90
22.5
MONOCYTES_91
21.9
Show allShow less
Non-classical monocyte TPM: 38.6
Samples: 90
Max TPM: 59.0
Min TPM: 27.6
M2_1
59.0
M2_2
56.3
M2_3
51.8
M2_4
51.5
M2_5
51.2
M2_6
50.6
M2_7
50.5
M2_8
48.9
M2_9
47.3
M2_10
47.3
M2_11
47.2
M2_12
47.0
M2_13
45.3
M2_14
45.2
M2_15
44.8
M2_16
44.4
M2_17
43.7
M2_18
43.1
M2_19
43.1
M2_20
42.8
M2_21
42.6
M2_22
41.8
M2_23
41.6
M2_24
41.4
M2_25
41.0
M2_26
40.9
M2_27
40.7
M2_28
40.1
M2_29
39.8
M2_30
39.6
M2_31
39.5
M2_32
39.4
M2_33
39.4
M2_34
39.4
M2_35
39.4
M2_36
39.2
M2_37
38.9
M2_38
38.4
M2_39
38.4
M2_40
38.3
M2_41
38.2
M2_42
38.1
M2_43
38.1
M2_44
37.9
M2_45
37.9
M2_46
37.9
M2_47
37.8
M2_48
37.6
M2_49
37.6
M2_50
37.3
M2_51
37.2
M2_52
37.2
M2_53
36.8
M2_54
36.2
M2_55
36.1
M2_56
35.8
M2_57
35.6
M2_58
35.5
M2_59
35.4
M2_60
35.3
M2_61
35.1
M2_62
35.1
M2_63
35.1
M2_64
34.8
M2_65
34.7
M2_66
34.6
M2_67
34.5
M2_68
34.5
M2_69
33.8
M2_70
33.6
M2_71
33.6
M2_72
33.4
M2_73
33.3
M2_74
32.9
M2_75
32.6
M2_76
32.6
M2_77
32.5
M2_78
32.5
M2_79
31.4
M2_80
31.0
M2_81
31.0
M2_82
30.9
M2_83
30.8
M2_84
30.8
M2_85
30.7
M2_86
30.7
M2_87
30.3
M2_88
30.2
M2_89
29.2
M2_90
27.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
