A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
14.3
nTPM
Schmiedel:
74.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
NK-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1013
0.2
P10809_1033
0.1
P10809_1052
0.0
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.3
Monaco sample
nTPM
NK-cell nTPM: 14.4
Samples: 4
Max nTPM: 20.8
Min nTPM: 10.6
RHH5316_R3683
20.8
RHH5224_R3596
10.7
RHH5253_R3625
15.3
RHH5282_R3654
10.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.0
Schmiedel sample id
TPM
NK-cell TPM: 74.0
Samples: 90
Max TPM: 132.6
Min TPM: 18.6
NK_1
132.6
NK_2
129.2
NK_3
122.2
NK_4
120.3
NK_5
115.8
NK_6
115.4
NK_7
115.4
NK_8
114.9
NK_9
112.6
NK_10
111.6
NK_11
109.4
NK_12
108.3
NK_13
106.5
NK_14
106.0
NK_15
104.4
NK_16
104.2
NK_17
100.2
NK_18
99.9
NK_19
97.1
NK_20
97.0
NK_21
96.3
NK_22
96.1
NK_23
94.9
NK_24
94.3
NK_25
92.6
NK_26
91.5
NK_27
90.7
NK_28
90.5
NK_29
90.3
NK_30
89.0
NK_31
85.7
NK_32
83.8
NK_33
83.2
NK_34
82.9
NK_35
82.5
NK_36
82.4
NK_37
82.1
NK_38
81.1
NK_39
80.6
NK_40
79.8
NK_41
78.6
NK_42
78.2
NK_43
76.0
NK_44
75.8
NK_45
75.4
NK_46
74.0
NK_47
73.5
NK_48
73.2
NK_49
72.7
NK_50
69.7
NK_51
69.3
NK_52
65.7
NK_53
65.2
NK_54
62.7
NK_55
61.4
NK_56
60.8
NK_57
60.2
NK_58
60.2
NK_59
60.1
NK_60
59.1
NK_61
58.6
NK_62
58.5
NK_63
58.5
NK_64
58.3
NK_65
58.2
NK_66
55.9
NK_67
55.1
NK_68
54.5
NK_69
52.8
NK_70
51.6
NK_71
51.5
NK_72
51.3
NK_73
50.3
NK_74
48.5
NK_75
47.9
NK_76
47.8
NK_77
46.9
NK_78
44.7
NK_79
43.0
NK_80
38.5
NK_81
36.1
NK_82
34.7
NK_83
32.8
NK_84
32.5
NK_85
30.3
NK_86
28.0
NK_87
26.3
NK_88
25.1
NK_89
19.3
NK_90
18.6
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