A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
10.4
nTPM
Schmiedel:
33.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Memory B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1017
0.1
P10809_1025
0.0
P10809_1044
0.6
P10809_1063
0.1
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 2.4
Samples: 6
Max nTPM: 4.4
Min nTPM: 0.0
P10809_1011
3.8
P10809_1029
4.4
P10809_1048
0.0
P10809_1067
3.4
P10809_1091
2.5
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.4
Samples: 4
Max nTPM: 31.5
Min nTPM: 0.0
RHH5310_R3677
2.0
RHH5218_R3590
31.5
RHH5247_R3619
0.0
RHH5276_R3648
0.0
Naive B-cell nTPM: 10.5
Samples: 4
Max nTPM: 30.1
Min nTPM: 0.0
RHH5308_R3675
11.8
RHH5216_R3588
30.1
RHH5245_R3617
0.0
RHH5274_R3646
0.0
Non-switched memory B-cell nTPM: 2.9
Samples: 4
Max nTPM: 10.8
Min nTPM: 0.0
RHH5309_R3676
0.9
RHH5217_R3589
10.8
RHH5246_R3618
0.0
RHH5275_R3647
0.0
Plasmablast nTPM: 0.1
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.4
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 1.3
Samples: 4
Max nTPM: 5.2
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
5.2
RHH5248_R3620
0.0
RHH5277_R3649
0.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
Schmiedel sample id
TPM
Naive B-cell TPM: 33.2
Samples: 91
Max TPM: 86.9
Min TPM: 0.0
B_CELL_NAIVE_1
86.9
B_CELL_NAIVE_2
74.8
B_CELL_NAIVE_3
73.8
B_CELL_NAIVE_4
71.8
B_CELL_NAIVE_5
70.8
B_CELL_NAIVE_6
70.6
B_CELL_NAIVE_7
68.5
B_CELL_NAIVE_8
68.3
B_CELL_NAIVE_9
68.3
B_CELL_NAIVE_10
68.1
B_CELL_NAIVE_11
64.8
B_CELL_NAIVE_12
61.9
B_CELL_NAIVE_13
61.6
B_CELL_NAIVE_14
61.2
B_CELL_NAIVE_15
57.5
B_CELL_NAIVE_16
57.0
B_CELL_NAIVE_17
56.8
B_CELL_NAIVE_18
56.3
B_CELL_NAIVE_19
53.1
B_CELL_NAIVE_20
49.1
B_CELL_NAIVE_21
48.4
B_CELL_NAIVE_22
48.2
B_CELL_NAIVE_23
47.5
B_CELL_NAIVE_24
46.9
B_CELL_NAIVE_25
45.5
B_CELL_NAIVE_26
45.5
B_CELL_NAIVE_27
45.2
B_CELL_NAIVE_28
44.4
B_CELL_NAIVE_29
44.2
B_CELL_NAIVE_30
42.6
B_CELL_NAIVE_31
41.8
B_CELL_NAIVE_32
41.2
B_CELL_NAIVE_33
39.7
B_CELL_NAIVE_34
39.4
B_CELL_NAIVE_35
38.9
B_CELL_NAIVE_36
38.3
B_CELL_NAIVE_37
38.2
B_CELL_NAIVE_38
37.0
B_CELL_NAIVE_39
36.4
B_CELL_NAIVE_40
34.5
B_CELL_NAIVE_41
33.9
B_CELL_NAIVE_42
33.7
B_CELL_NAIVE_43
33.5
B_CELL_NAIVE_44
33.5
B_CELL_NAIVE_45
33.2
B_CELL_NAIVE_46
33.0
B_CELL_NAIVE_47
32.0
B_CELL_NAIVE_48
31.5
B_CELL_NAIVE_49
31.4
B_CELL_NAIVE_50
30.9
B_CELL_NAIVE_51
30.2
B_CELL_NAIVE_52
28.5
B_CELL_NAIVE_53
27.9
B_CELL_NAIVE_54
27.9
B_CELL_NAIVE_55
27.3
B_CELL_NAIVE_56
27.1
B_CELL_NAIVE_57
25.6
B_CELL_NAIVE_58
25.3
B_CELL_NAIVE_59
25.3
B_CELL_NAIVE_60
25.2
B_CELL_NAIVE_61
24.5
B_CELL_NAIVE_62
24.2
B_CELL_NAIVE_63
23.8
B_CELL_NAIVE_64
23.2
B_CELL_NAIVE_65
23.2
B_CELL_NAIVE_66
22.8
B_CELL_NAIVE_67
21.9
B_CELL_NAIVE_68
21.8
B_CELL_NAIVE_69
20.0
B_CELL_NAIVE_70
19.2
B_CELL_NAIVE_71
18.8
B_CELL_NAIVE_72
18.1
B_CELL_NAIVE_73
15.7
B_CELL_NAIVE_74
0.6
B_CELL_NAIVE_75
0.3
B_CELL_NAIVE_76
0.2
B_CELL_NAIVE_77
0.2
B_CELL_NAIVE_78
0.1
B_CELL_NAIVE_79
0.1
B_CELL_NAIVE_80
0.1
B_CELL_NAIVE_81
0.1
B_CELL_NAIVE_82
0.1
B_CELL_NAIVE_83
0.1
B_CELL_NAIVE_84
0.0
B_CELL_NAIVE_85
0.0
B_CELL_NAIVE_86
0.0
B_CELL_NAIVE_87
0.0
B_CELL_NAIVE_88
0.0
B_CELL_NAIVE_89
0.0
B_CELL_NAIVE_90
0.0
B_CELL_NAIVE_91
0.0
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The Human Protein Atlas project is funded
