BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:163.7 nTPM
GTEx:35.5 nTPM
FANTOM5:83.4 Scaled Tags Per Million
Macaque:89.1 nTPM
Mouse:45.6 nTPM
Rat:41.0 nTPM
Pig:119.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 163.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.6
2219 Male, age 76, both hemispheres 231.5
2586 Male, age 75, left hemisphere 173.5
2828 Female, age 72, unknown 161.1
1827 Male, age 72, unknown 135.8
2666 Male, age 74, left hemisphere 135.3
2019 Male, age 18, unknown 130.6
1870 Female, age 42, unknown 119.2
1830 Male, age 51, unknown 114.8
2411 Female, age 72, unknown 113.5
1833 Male, age 53, unknown 110.5
Dorsal raphe nucleus
nTPM: 135.5
2016 Female, age 72, unknown 150.6
2047 Male, age 72, unknown 149.4
1828 Male, age 53, unknown 146.9
2298 Female, age 72, unknown 131.7
2750 Male, age 76, both hemispheres 98.6
Inferior colliculus
nTPM: 133.1
1890 Male, age 53, unknown 142.0
1848 Female, age 42, unknown 140.7
2849 Male, age 72, unknown 128.4
2097 Female, age 72, unknown 121.4
Median raphe nucleus
nTPM: 132.0
2220 Male, age 76, midline 132.0
Periaquaductal grey, anterior
nTPM: 163.7
1947 Male, age 18, unknown 200.3
1795 Male, age 51, unknown 170.1
2502 Female, age 75, unknown 120.6
Periaquaductal grey, dorsal
nTPM: 142.8
2850 Male, age 76, both hemispheres 189.1
1840 Male, age 53, unknown 140.1
2464 Female, age 72, unknown 123.2
1831 Male, age 72, unknown 119.0
Periaquaductal grey, lateral
nTPM: 148.7
2140 Male, age 76, both hemispheres 183.0
2053 Male, age 18, unknown 139.4
2272 Male, age 74, both hemispheres 123.6
Pretectal area
nTPM: 132.6
1817 Female, age 42, unknown 155.8
2667 Female, age 75, unknown 147.3
1816 Male, age 51, unknown 139.4
1944 Female, age 72, unknown 136.2
2273 Male, age 74, both hemispheres 135.0
2007 Male, age 72, unknown 131.7
2407 Male, age 75, both hemispheres 131.5
2825 Male, age 18, unknown 130.1
2224 Female, age 72, unknown 125.9
2316 Male, age 76, right hemisphere 114.2
1815 Male, age 53, unknown 111.9
Red nucleus
nTPM: 114.6
2725 Female, age 75, unknown 130.9
1821 Female, age 72, unknown 125.1
1954 Female, age 42, unknown 123.7
2503 Female, age 72, unknown 123.3
2584 Male, age 75, left hemisphere 119.0
1865 Male, age 51, unknown 114.2
2227 Male, age 72, unknown 113.7
2769 Male, age 72, unknown 111.0
2588 Male, age 74, left hemisphere 108.4
2785 Male, age 18, unknown 105.7
1904 Male, age 53, unknown 105.2
2823 Male, age 76, right hemisphere 94.6
Substantia nigra
nTPM: 143.9
1941 Male, age 53, unknown 174.0
1916 Female, age 42, unknown 156.9
1851 Male, age 51, unknown 151.2
2241 Male, age 72, unknown 148.7
2665 Male, age 74, both hemispheres 138.4
2583 Male, age 75, right hemisphere 138.3
2590 Female, age 75, unknown 138.2
2699 Male, age 18, unknown 136.3
2409 Female, age 72, unknown 128.6
1889 Female, age 72, unknown 128.5
Superior colliculus
nTPM: 128.6
1796 Male, age 53, unknown 142.4
1995 Male, age 72, unknown 142.3
2664 Male, age 75, both hemispheres 141.4
2668 Female, age 75, unknown 137.5
2087 Female, age 72, unknown 133.4
2261 Male, age 18, unknown 131.5
1839 Male, age 51, unknown 129.2
1913 Female, age 42, unknown 118.3
2587 Male, age 74, left hemisphere 115.8
1895 Male, age 76, right hemisphere 93.8
Ventral tegmental area
nTPM: 137.2
1915 Female, age 42, unknown 140.8
2021 Male, age 53, unknown 139.2
1942 Male, age 51, unknown 138.6
2218 Male, age 76, both hemispheres 137.0
2223 Female, age 72, unknown 135.6
2410 Female, age 72, unknown 132.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 183

Max nTPM: 63.1
Min nTPM: 10.1
Std nTPM: 9.8
Median nTPM: 35.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 63.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 58.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 58.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 58.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 56.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 56.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 55.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 55.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 55.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 54.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.4
FF:10158-103A5 76 years, female 83.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 89.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 84.4
Samples: 1

Max nTPM: 84.4
Min nTPM: 84.4
Sample A 84.4
Midbrain
nTPM: 89.1
Samples: 1

Max nTPM: 89.1
Min nTPM: 89.1
Sample A 89.1
Superior colliculi
nTPM: 82.2
Samples: 1

Max nTPM: 82.2
Min nTPM: 82.2
Sample A 82.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.7
Samples: 3

Max nTPM: 120.2
Min nTPM: 116.0
Sample A Female 116.0
Sample B Female 120.0
Sample C Male 120.2
Midbrain
nTPM: 114.6
Samples: 3

Max nTPM: 119.2
Min nTPM: 110.2
Sample B Female 114.4
Sample C Male 110.2
Sample D Male 119.2
Periaqueductal gray
nTPM: 118.0
Samples: 3

Max nTPM: 122.2
Min nTPM: 114.0
Sample B Female 117.8
Sample C Male 122.2
Sample D Male 114.0
Superior colliculi
nTPM: 119.9
Samples: 4

Max nTPM: 133.2
Min nTPM: 100.0
Sample A Female 127.4
Sample B Female 133.2
Sample C Male 100.0
Sample D Male 119.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.6
Samples: 4

Max nTPM: 47.4
Min nTPM: 42.5
Sample A 42.5
Sample B 46.8
Sample C 47.4
Sample D 45.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 41.0
Rat sample Sample description nTPM
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 42.0
Min nTPM: 39.9
Sample A 39.9
Sample A 42.0
Sample A 41.6
Sample A 40.7

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