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BETA
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  • ABLIM1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:52.3 nTPM
Monaco:256.9 nTPM
Schmiedel:159.5 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

52.3
HPA sample nTPM
Memory B-cell
nTPM: 41.0
Samples: 6

Max nTPM: 60.5
Min nTPM: 18.3
P10809_1017 47.2
P10809_1025 34.3
P10809_1044 18.3
P10809_1063 60.4
P10809_1092 60.5
P10809_1105 25.3
Naive B-cell
nTPM: 52.3
Samples: 6

Max nTPM: 90.2
Min nTPM: 36.3
P10809_1011 39.4
P10809_1029 50.1
P10809_1048 90.2
P10809_1067 46.6
P10809_1091 51.4
P10809_1104 36.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

256.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 181.1
Samples: 4

Max nTPM: 233.8
Min nTPM: 126.1
RHH5310_R3677 126.1
RHH5218_R3590 196.1
RHH5247_R3619 233.8
RHH5276_R3648 168.2
Naive B-cell
nTPM: 256.9
Samples: 4

Max nTPM: 306.9
Min nTPM: 228.5
RHH5308_R3675 228.5
RHH5216_R3588 234.8
RHH5245_R3617 306.9
RHH5274_R3646 257.5
Non-switched memory B-cell
nTPM: 255.4
Samples: 4

Max nTPM: 286.4
Min nTPM: 209.8
RHH5309_R3676 209.8
RHH5217_R3589 286.4
RHH5246_R3618 271.8
RHH5275_R3647 253.4
Plasmablast
nTPM: 5.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 3.3
RHH5312_R3679 5.4
RHH5220_R3592 4.4
RHH5249_R3621 9.5
RHH5278_R3650 3.3
Switched memory B-cell
nTPM: 218.9
Samples: 4

Max nTPM: 284.9
Min nTPM: 175.1
RHH5311_R3678 175.1
RHH5219_R3591 231.9
RHH5248_R3620 284.9
RHH5277_R3649 183.6

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

159.5
Schmiedel sample id TPM
Naive B-cell
TPM: 159.5
Samples: 91

Max TPM: 218.7
Min TPM: 97.1
B_CELL_NAIVE_1 218.7
B_CELL_NAIVE_2 204.8
B_CELL_NAIVE_3 203.4
B_CELL_NAIVE_4 190.2
B_CELL_NAIVE_5 188.2
B_CELL_NAIVE_6 187.4
B_CELL_NAIVE_7 186.4
B_CELL_NAIVE_8 184.2
B_CELL_NAIVE_9 181.5
B_CELL_NAIVE_10 179.6
B_CELL_NAIVE_11 178.7
B_CELL_NAIVE_12 178.1
B_CELL_NAIVE_13 177.8
B_CELL_NAIVE_14 177.2
B_CELL_NAIVE_15 176.6
B_CELL_NAIVE_16 175.0
B_CELL_NAIVE_17 174.5
B_CELL_NAIVE_18 173.7
B_CELL_NAIVE_19 173.6
B_CELL_NAIVE_20 172.5
B_CELL_NAIVE_21 171.4
B_CELL_NAIVE_22 170.5
B_CELL_NAIVE_23 169.9
B_CELL_NAIVE_24 169.3
B_CELL_NAIVE_25 168.8
B_CELL_NAIVE_26 168.1
B_CELL_NAIVE_27 167.3
B_CELL_NAIVE_28 166.8
B_CELL_NAIVE_29 166.7
B_CELL_NAIVE_30 166.3
B_CELL_NAIVE_31 166.1
B_CELL_NAIVE_32 164.8
B_CELL_NAIVE_33 164.6
B_CELL_NAIVE_34 163.6
B_CELL_NAIVE_35 163.6
B_CELL_NAIVE_36 163.1
B_CELL_NAIVE_37 162.8
B_CELL_NAIVE_38 162.5
B_CELL_NAIVE_39 162.3
B_CELL_NAIVE_40 160.7
B_CELL_NAIVE_41 160.5
B_CELL_NAIVE_42 160.3
B_CELL_NAIVE_43 160.0
B_CELL_NAIVE_44 159.9
B_CELL_NAIVE_45 159.9
B_CELL_NAIVE_46 159.8
B_CELL_NAIVE_47 158.3
B_CELL_NAIVE_48 157.0
B_CELL_NAIVE_49 156.9
B_CELL_NAIVE_50 156.6
B_CELL_NAIVE_51 156.1
B_CELL_NAIVE_52 156.1
B_CELL_NAIVE_53 156.0
B_CELL_NAIVE_54 155.9
B_CELL_NAIVE_55 155.4
B_CELL_NAIVE_56 154.4
B_CELL_NAIVE_57 154.0
B_CELL_NAIVE_58 152.7
B_CELL_NAIVE_59 152.2
B_CELL_NAIVE_60 151.4
B_CELL_NAIVE_61 151.3
B_CELL_NAIVE_62 150.9
B_CELL_NAIVE_63 150.3
B_CELL_NAIVE_64 150.1
B_CELL_NAIVE_65 149.5
B_CELL_NAIVE_66 148.6
B_CELL_NAIVE_67 148.4
B_CELL_NAIVE_68 148.3
B_CELL_NAIVE_69 147.6
B_CELL_NAIVE_70 147.4
B_CELL_NAIVE_71 146.7
B_CELL_NAIVE_72 145.3
B_CELL_NAIVE_73 144.7
B_CELL_NAIVE_74 144.7
B_CELL_NAIVE_75 143.8
B_CELL_NAIVE_76 143.6
B_CELL_NAIVE_77 143.5
B_CELL_NAIVE_78 143.0
B_CELL_NAIVE_79 142.4
B_CELL_NAIVE_80 142.0
B_CELL_NAIVE_81 141.4
B_CELL_NAIVE_82 139.3
B_CELL_NAIVE_83 138.4
B_CELL_NAIVE_84 137.3
B_CELL_NAIVE_85 137.2
B_CELL_NAIVE_86 134.1
B_CELL_NAIVE_87 133.0
B_CELL_NAIVE_88 129.9
B_CELL_NAIVE_89 128.4
B_CELL_NAIVE_90 127.5
B_CELL_NAIVE_91 97.1
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