A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
81.4
nTPM
Schmiedel:
30.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Classical monocyte nTPM: 9.0
Samples: 6
Max nTPM: 12.2
Min nTPM: 5.6
P10809_1003
11.5
P10809_1020
10.4
P10809_1039
12.2
P10809_1058
8.1
P10809_1080
6.5
P10809_1107
5.6
Intermediate monocyte nTPM: 11.6
Samples: 6
Max nTPM: 16.1
Min nTPM: 6.7
P10809_1004
11.6
P10809_1023
11.8
P10809_1042
15.4
P10809_1061
16.1
P10809_1081
8.0
P10809_1108
6.7
Non-classical monocyte nTPM: 7.0
Samples: 5
Max nTPM: 13.0
Min nTPM: 0.5
P10809_1005
9.2
P10809_1053
13.0
P10809_1072
0.5
P10809_1082
5.9
P10809_1109
6.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.4
Monaco sample
nTPM
Classical monocyte nTPM: 81.4
Samples: 4
Max nTPM: 133.2
Min nTPM: 59.8
RHH5313_R3680
66.5
RHH5221_R3593
133.2
RHH5250_R3622
66.2
RHH5279_R3651
59.8
Intermediate monocyte nTPM: 79.2
Samples: 4
Max nTPM: 145.1
Min nTPM: 46.0
RHH5314_R3681
61.7
RHH5222_R3594
145.1
RHH5251_R3623
46.0
RHH5280_R3652
64.0
Non-classical monocyte nTPM: 80.8
Samples: 4
Max nTPM: 126.0
Min nTPM: 57.3
RHH5315_R3682
57.3
RHH5223_R3595
126.0
RHH5252_R3624
71.2
RHH5281_R3653
68.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.0
Schmiedel sample id
TPM
Classical monocyte TPM: 30.0
Samples: 91
Max TPM: 44.7
Min TPM: 20.9
MONOCYTES_1
44.7
MONOCYTES_2
41.6
MONOCYTES_3
41.4
MONOCYTES_4
39.9
MONOCYTES_5
39.5
MONOCYTES_6
37.7
MONOCYTES_7
37.6
MONOCYTES_8
37.3
MONOCYTES_9
37.1
MONOCYTES_10
36.9
MONOCYTES_11
36.6
MONOCYTES_12
36.4
MONOCYTES_13
36.3
MONOCYTES_14
35.6
MONOCYTES_15
35.2
MONOCYTES_16
34.9
MONOCYTES_17
34.4
MONOCYTES_18
34.2
MONOCYTES_19
33.7
MONOCYTES_20
33.3
MONOCYTES_21
33.2
MONOCYTES_22
32.9
MONOCYTES_23
32.4
MONOCYTES_24
32.2
MONOCYTES_25
32.0
MONOCYTES_26
31.9
MONOCYTES_27
31.8
MONOCYTES_28
31.6
MONOCYTES_29
31.5
MONOCYTES_30
31.3
MONOCYTES_31
30.8
MONOCYTES_32
30.7
MONOCYTES_33
30.4
MONOCYTES_34
30.0
MONOCYTES_35
30.0
MONOCYTES_36
29.8
MONOCYTES_37
29.7
MONOCYTES_38
29.7
MONOCYTES_39
29.6
MONOCYTES_40
29.6
MONOCYTES_41
29.6
MONOCYTES_42
29.6
MONOCYTES_43
29.5
MONOCYTES_44
29.4
MONOCYTES_45
29.3
MONOCYTES_46
29.2
MONOCYTES_47
29.1
MONOCYTES_48
29.1
MONOCYTES_49
29.0
MONOCYTES_50
29.0
MONOCYTES_51
28.8
MONOCYTES_52
28.8
MONOCYTES_53
28.7
MONOCYTES_54
28.6
MONOCYTES_55
28.4
MONOCYTES_56
28.4
MONOCYTES_57
27.8
MONOCYTES_58
27.8
MONOCYTES_59
27.5
MONOCYTES_60
27.3
MONOCYTES_61
27.1
MONOCYTES_62
27.1
MONOCYTES_63
26.9
MONOCYTES_64
26.7
MONOCYTES_65
26.7
MONOCYTES_66
26.7
MONOCYTES_67
26.6
MONOCYTES_68
26.6
MONOCYTES_69
26.4
MONOCYTES_70
26.4
MONOCYTES_71
26.4
MONOCYTES_72
26.4
MONOCYTES_73
26.4
MONOCYTES_74
26.2
MONOCYTES_75
26.2
MONOCYTES_76
26.0
MONOCYTES_77
25.9
MONOCYTES_78
25.9
MONOCYTES_79
25.8
MONOCYTES_80
25.5
MONOCYTES_81
25.4
MONOCYTES_82
25.1
MONOCYTES_83
24.8
MONOCYTES_84
24.7
MONOCYTES_85
24.1
MONOCYTES_86
24.0
MONOCYTES_87
23.6
MONOCYTES_88
23.5
MONOCYTES_89
23.0
MONOCYTES_90
22.4
MONOCYTES_91
20.9
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Non-classical monocyte TPM: 27.7
Samples: 90
Max TPM: 44.7
Min TPM: 20.5
M2_1
44.7
M2_2
42.8
M2_3
38.8
M2_4
38.1
M2_5
36.9
M2_6
36.1
M2_7
35.9
M2_8
35.5
M2_9
35.3
M2_10
34.3
M2_11
33.9
M2_12
33.5
M2_13
32.8
M2_14
32.7
M2_15
32.5
M2_16
32.4
M2_17
32.2
M2_18
32.0
M2_19
31.5
M2_20
31.4
M2_21
31.4
M2_22
31.3
M2_23
31.2
M2_24
30.9
M2_25
30.1
M2_26
30.0
M2_27
29.6
M2_28
29.3
M2_29
28.9
M2_30
28.9
M2_31
28.8
M2_32
28.6
M2_33
28.4
M2_34
28.1
M2_35
28.0
M2_36
27.5
M2_37
27.4
M2_38
27.2
M2_39
26.9
M2_40
26.7
M2_41
26.5
M2_42
26.4
M2_43
26.4
M2_44
26.4
M2_45
26.3
M2_46
26.2
M2_47
26.2
M2_48
26.1
M2_49
26.0
M2_50
25.9
M2_51
25.8
M2_52
25.8
M2_53
25.7
M2_54
25.7
M2_55
25.6
M2_56
25.6
M2_57
25.6
M2_58
25.5
M2_59
25.3
M2_60
25.3
M2_61
25.1
M2_62
25.0
M2_63
25.0
M2_64
24.7
M2_65
24.4
M2_66
24.4
M2_67
24.2
M2_68
23.9
M2_69
23.8
M2_70
23.8
M2_71
23.7
M2_72
23.6
M2_73
23.4
M2_74
23.3
M2_75
23.3
M2_76
23.1
M2_77
22.9
M2_78
22.8
M2_79
22.6
M2_80
22.6
M2_81
22.6
M2_82
22.5
M2_83
22.2
M2_84
22.0
M2_85
21.9
M2_86
21.5
M2_87
21.4
M2_88
21.1
M2_89
20.5
M2_90
20.5
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