A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
34.2
nTPM
Schmiedel:
35.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
Classical monocyte nTPM: 6.9
Samples: 6
Max nTPM: 10.0
Min nTPM: 3.9
P10809_1003
6.9
P10809_1020
6.2
P10809_1039
9.4
P10809_1058
4.9
P10809_1080
3.9
P10809_1107
10.0
Intermediate monocyte nTPM: 6.2
Samples: 6
Max nTPM: 10.4
Min nTPM: 3.5
P10809_1004
9.3
P10809_1023
5.5
P10809_1042
4.2
P10809_1061
4.1
P10809_1081
3.5
P10809_1108
10.4
Non-classical monocyte nTPM: 7.2
Samples: 5
Max nTPM: 15.3
Min nTPM: 1.8
P10809_1005
8.1
P10809_1053
1.8
P10809_1072
15.3
P10809_1082
3.7
P10809_1109
7.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.2
Monaco sample
nTPM
Classical monocyte nTPM: 34.3
Samples: 4
Max nTPM: 44.0
Min nTPM: 29.7
RHH5313_R3680
33.5
RHH5221_R3593
29.7
RHH5250_R3622
29.9
RHH5279_R3651
44.0
Intermediate monocyte nTPM: 31.6
Samples: 4
Max nTPM: 37.3
Min nTPM: 23.7
RHH5314_R3681
37.3
RHH5222_R3594
31.0
RHH5251_R3623
34.4
RHH5280_R3652
23.7
Non-classical monocyte nTPM: 27.3
Samples: 4
Max nTPM: 33.6
Min nTPM: 18.1
RHH5315_R3682
33.6
RHH5223_R3595
28.0
RHH5252_R3624
29.6
RHH5281_R3653
18.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Schmiedel sample id
TPM
Classical monocyte TPM: 35.0
Samples: 91
Max TPM: 49.1
Min TPM: 24.5
MONOCYTES_1
49.1
MONOCYTES_2
46.1
MONOCYTES_3
46.0
MONOCYTES_4
44.3
MONOCYTES_5
43.5
MONOCYTES_6
43.4
MONOCYTES_7
42.2
MONOCYTES_8
42.1
MONOCYTES_9
41.8
MONOCYTES_10
41.4
MONOCYTES_11
40.8
MONOCYTES_12
40.0
MONOCYTES_13
39.9
MONOCYTES_14
39.9
MONOCYTES_15
39.8
MONOCYTES_16
39.7
MONOCYTES_17
39.7
MONOCYTES_18
39.5
MONOCYTES_19
39.1
MONOCYTES_20
39.1
MONOCYTES_21
39.1
MONOCYTES_22
39.0
MONOCYTES_23
38.5
MONOCYTES_24
38.3
MONOCYTES_25
38.3
MONOCYTES_26
38.1
MONOCYTES_27
37.8
MONOCYTES_28
37.8
MONOCYTES_29
37.7
MONOCYTES_30
37.5
MONOCYTES_31
37.4
MONOCYTES_32
37.1
MONOCYTES_33
37.0
MONOCYTES_34
36.9
MONOCYTES_35
36.8
MONOCYTES_36
36.7
MONOCYTES_37
36.7
MONOCYTES_38
36.7
MONOCYTES_39
36.6
MONOCYTES_40
36.5
MONOCYTES_41
36.4
MONOCYTES_42
35.7
MONOCYTES_43
35.6
MONOCYTES_44
35.1
MONOCYTES_45
34.8
MONOCYTES_46
34.6
MONOCYTES_47
34.1
MONOCYTES_48
34.0
MONOCYTES_49
34.0
MONOCYTES_50
33.8
MONOCYTES_51
33.8
MONOCYTES_52
33.7
MONOCYTES_53
33.7
MONOCYTES_54
33.4
MONOCYTES_55
33.4
MONOCYTES_56
33.3
MONOCYTES_57
33.3
MONOCYTES_58
32.9
MONOCYTES_59
32.9
MONOCYTES_60
32.7
MONOCYTES_61
32.4
MONOCYTES_62
32.3
MONOCYTES_63
32.1
MONOCYTES_64
32.1
MONOCYTES_65
32.1
MONOCYTES_66
32.0
MONOCYTES_67
31.5
MONOCYTES_68
31.4
MONOCYTES_69
31.0
MONOCYTES_70
30.9
MONOCYTES_71
30.9
MONOCYTES_72
30.9
MONOCYTES_73
30.8
MONOCYTES_74
30.5
MONOCYTES_75
30.4
MONOCYTES_76
30.2
MONOCYTES_77
30.0
MONOCYTES_78
29.2
MONOCYTES_79
29.0
MONOCYTES_80
28.8
MONOCYTES_81
28.6
MONOCYTES_82
28.4
MONOCYTES_83
28.4
MONOCYTES_84
28.3
MONOCYTES_85
27.3
MONOCYTES_86
27.2
MONOCYTES_87
27.1
MONOCYTES_88
26.8
MONOCYTES_89
26.5
MONOCYTES_90
26.1
MONOCYTES_91
24.5
Show allShow less
Non-classical monocyte TPM: 26.0
Samples: 90
Max TPM: 37.7
Min TPM: 16.4
M2_1
37.7
M2_2
35.6
M2_3
35.1
M2_4
33.8
M2_5
33.0
M2_6
31.1
M2_7
31.0
M2_8
30.7
M2_9
30.7
M2_10
30.5
M2_11
30.2
M2_12
30.1
M2_13
30.0
M2_14
29.9
M2_15
29.7
M2_16
29.6
M2_17
29.3
M2_18
29.1
M2_19
29.1
M2_20
29.0
M2_21
28.9
M2_22
28.9
M2_23
28.9
M2_24
28.9
M2_25
28.7
M2_26
28.4
M2_27
28.1
M2_28
28.0
M2_29
28.0
M2_30
27.9
M2_31
27.6
M2_32
27.5
M2_33
27.5
M2_34
27.3
M2_35
27.2
M2_36
27.1
M2_37
27.1
M2_38
27.0
M2_39
27.0
M2_40
26.8
M2_41
26.6
M2_42
26.6
M2_43
26.4
M2_44
26.3
M2_45
26.3
M2_46
25.9
M2_47
25.8
M2_48
25.7
M2_49
25.6
M2_50
25.5
M2_51
25.4
M2_52
25.1
M2_53
25.1
M2_54
25.1
M2_55
25.0
M2_56
25.0
M2_57
24.9
M2_58
24.9
M2_59
24.8
M2_60
24.7
M2_61
24.3
M2_62
24.2
M2_63
24.2
M2_64
24.1
M2_65
24.1
M2_66
24.1
M2_67
23.9
M2_68
23.7
M2_69
23.5
M2_70
23.2
M2_71
22.9
M2_72
22.8
M2_73
22.7
M2_74
22.7
M2_75
22.0
M2_76
21.7
M2_77
21.7
M2_78
21.5
M2_79
21.0
M2_80
20.9
M2_81
20.8
M2_82
20.7
M2_83
20.5
M2_84
19.2
M2_85
18.6
M2_86
18.0
M2_87
18.0
M2_88
16.5
M2_89
16.5
M2_90
16.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
