BETA
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:97.0 nTPM
HPA Brain:123.5 nTPM
GTEx:97.0 nTPM
FANTOM5:217.3 Scaled Tags Per Million
Macaque:96.0 nTPM
Mouse:99.4 nTPM
Rat:0.4 nTPM
Pig:81.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006702Antibody CAB021101
Glial cells LowNot detected
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 20441
Sample Intensity
Hippocampal formation_01
 19356
Hippocampal formation_02
 22610
Hippocampal formation_03
 11187
Hippocampal formation_04
 25311
Hippocampal formation_05
 20200
Hippocampal formation_06
 20683

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 123.5
Sample id Sample description nTPM
Dentate gyrus
nTPM: 109.1
2010 Male, age 76, both hemispheres 132.7
2530 Female, age 94, left hemisphere 123.6
1927 Female, age 91, both hemispheres 110.7
2246 Female, age 85, both hemispheres 103.4
2528 Male, age 74, both hemispheres 96.1
2531 Female, age 67, both hemispheres 88.3
Entorhinal gyrus
nTPM: 100.3
2764 Male, age 80, right hemisphere 121.5
1938 Female, age 85, left hemisphere 111.0
2613 Female, age 94, left hemisphere 106.2
1787 Male, age 76, left hemisphere 103.4
2117 Female, age 91, right hemisphere 90.0
2686 Male, age 75, right hemisphere 69.4
Hippocampus, CA1
nTPM: 118.2
2749 Male, age 80, left hemisphere 176.0
1873 Female, age 85, both hemispheres 111.4
2045 Male, age 76, both hemispheres 109.2
2527 Male, age 74, both hemispheres 102.6
2082 Female, age 91, right hemisphere 91.8
Hippocampus, CA2
nTPM: 109.6
1963 Male, age 80, left hemisphere 132.8
1892 Male, age 76, both hemispheres 125.6
2249 Male, age 74, both hemispheres 111.0
2437 Female, age 94, left hemisphere 103.1
1940 Female, age 85, left hemisphere 96.3
2113 Female, age 91, right hemisphere 88.7
Hippocampus, CA3
nTPM: 108.1
2137 Male, age 80, left hemisphere 131.3
1867 Male, age 76, both hemispheres 116.9
2436 Male, age 74, both hemispheres 116.8
2620 Female, age 94, left hemisphere 114.1
1891 Female, age 85, both hemispheres 91.3
2861 Female, age 67, both hemispheres 78.2
Parahippocampal cortex
nTPM: 97.3
1850 Male, age 80, both hemispheres 120.6
1933 Female, age 85, both hemispheres 108.6
2250 Female, age 67, right hemisphere 108.5
2018 Male, age 76, both hemispheres 106.9
2532 Female, age 72, left hemisphere 101.3
2245 Female, age 91, both hemispheres 97.6
1990 Female, age 91, right hemisphere 96.9
2693 Female, age 94, both hemispheres 92.6
2692 Male, age 74, both hemispheres 73.8
2622 Female, age 67, right hemisphere 65.9
Perirhinal gyrus
nTPM: 123.5
1847 Female, age 91, left hemisphere 146.7
1794 Male, age 80, right hemisphere 139.9
2521 Female, age 94, right hemisphere 122.0
1841 Female, age 85, right hemisphere 110.4
2848 Male, age 76, right hemisphere 98.5
Subiculum
nTPM: 98.4
1977 Female, age 85, both hemispheres 114.0
1901 Male, age 80, both hemispheres 107.8
2438 Female, age 94, left hemisphere 102.6
2729 Female, age 91, right hemisphere 90.3
2042 Male, age 76, both hemispheres 89.9
2619 Male, age 74, both hemispheres 85.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 97.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 97.0
Samples: 255

Max nTPM: 179.4
Min nTPM: 54.3
Std nTPM: 24.7
Median nTPM: 92.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 179.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 174.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 170.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 162.1
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 158.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 152.8
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 152.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 149.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 149.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 149.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 147.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 217.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 217.3
FF:10169-103B7 60 years, female 289.7
FF:10153-102I9 76 years, female 144.9

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi 96.0
Macaque sample Sample description nTPM
Subiculum
nTPM: 72.0
Samples: 1

Max nTPM: 72.0
Min nTPM: 72.0
Sample A 72.0
Entorhinal cortex
nTPM: 95.9
Samples: 2

Max nTPM: 100.6
Min nTPM: 91.3
Sample A 91.3
Sample B 100.6
Hippocampal formation
nTPM: 90.7
Samples: 4

Max nTPM: 119.5
Min nTPM: 69.7
Sample A 75.0
Sample B 69.7
Sample C 98.7
Sample D 119.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 81.4
Pig sample Sample description nTPM
Subiculum
nTPM: 65.1
Samples: 4

Max nTPM: 85.4
Min nTPM: 53.7
Sample A Female 85.4
Sample B Female 61.5
Sample C Male 53.7
Sample D Male 59.7
Dorsal hippocampus
nTPM: 81.4
Samples: 4

Max nTPM: 108.6
Min nTPM: 65.6
Sample A Female 108.6
Sample B Female 78.7
Sample C Male 72.7
Sample D Male 65.6
Entorhinal cortex
nTPM: 68.4
Samples: 4

Max nTPM: 79.4
Min nTPM: 55.6
Sample A Female 75.4
Sample B Female 79.4
Sample C Male 63.1
Sample D Male 55.6
Ventral hippocampus
nTPM: 72.9
Samples: 4

Max nTPM: 85.2
Min nTPM: 50.8
Sample A Female 85.2
Sample B Female 50.8
Sample C Male 79.6
Sample D Male 76.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 99.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.4
Samples: 4

Max nTPM: 104.0
Min nTPM: 95.9
Sample A 95.9
Sample B 104.0
Sample C 99.6
Sample D 98.0
Hippocampal formation
nTPM: 94.7
Samples: 4

Max nTPM: 109.9
Min nTPM: 72.8
Sample A 109.9
Sample B 87.3
Sample C 72.8
Sample D 108.6

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi 0.4
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A 0.5
Sample A 0.6
Sample A 0.2
Sample B 0.5
Ventral hippocampus
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A 0.3
Sample A 0.3
Sample A 0.2
Sample A 0.2

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