MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA Brain:125.7 nTPM
GTEx:27.9 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:135.7 nTPM
Mouse:249.0 nTPM
Allen mouse:16.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.7
2666 Male, age 74, left hemisphere 162.5
2219 Male, age 76, both hemispheres 138.7
2019 Male, age 18, unknown 109.9
2586 Male, age 75, left hemisphere 109.1
1827 Male, age 72, unknown 108.2
1833 Male, age 53, unknown 91.1
2411 Female, age 72, unknown 90.3
2828 Female, age 72, unknown 88.9
1870 Female, age 42, unknown 86.3
1830 Male, age 51, unknown 82.2
Dorsal raphe nucleus
nTPM: 83.6
1828 Male, age 53, unknown 102.0
2047 Male, age 72, unknown 90.9
2298 Female, age 72, unknown 85.6
2750 Male, age 76, both hemispheres 73.0
2016 Female, age 72, unknown 66.6
Inferior colliculus
nTPM: 117.0
2849 Male, age 72, unknown 142.2
1848 Female, age 42, unknown 125.3
2097 Female, age 72, unknown 108.8
1890 Male, age 53, unknown 91.9
Median raphe nucleus
nTPM: 90.9
2220 Male, age 76, midline 90.9
Periaquaductal grey, anterior
nTPM: 125.7
2502 Female, age 75, unknown 175.3
1947 Male, age 18, unknown 103.6
1795 Male, age 51, unknown 98.1
Periaquaductal grey, dorsal
nTPM: 86.7
2464 Female, age 72, unknown 100.8
1840 Male, age 53, unknown 97.5
2850 Male, age 76, both hemispheres 81.9
1831 Male, age 72, unknown 66.6
Periaquaductal grey, lateral
nTPM: 67.7
2140 Male, age 76, both hemispheres 83.5
2053 Male, age 18, unknown 68.8
2272 Male, age 74, both hemispheres 50.9
Pretectal area
nTPM: 97.3
2007 Male, age 72, unknown 140.3
1816 Male, age 51, unknown 132.7
1817 Female, age 42, unknown 124.4
1944 Female, age 72, unknown 119.5
1815 Male, age 53, unknown 96.7
2825 Male, age 18, unknown 86.9
2667 Female, age 75, unknown 85.4
2224 Female, age 72, unknown 82.5
2316 Male, age 76, right hemisphere 79.6
2407 Male, age 75, both hemispheres 79.3
2273 Male, age 74, both hemispheres 43.3
Red nucleus
nTPM: 73.4
2785 Male, age 18, unknown 102.7
2584 Male, age 75, left hemisphere 94.3
1821 Female, age 72, unknown 84.2
2769 Male, age 72, unknown 82.0
2227 Male, age 72, unknown 81.7
1954 Female, age 42, unknown 76.3
2588 Male, age 74, left hemisphere 69.8
2823 Male, age 76, right hemisphere 67.2
1865 Male, age 51, unknown 65.8
2503 Female, age 72, unknown 64.8
1904 Male, age 53, unknown 55.4
2725 Female, age 75, unknown 37.0
Substantia nigra
nTPM: 99.8
1941 Male, age 53, unknown 158.6
1916 Female, age 42, unknown 132.9
2665 Male, age 74, both hemispheres 130.8
1889 Female, age 72, unknown 118.5
1851 Male, age 51, unknown 99.7
2241 Male, age 72, unknown 92.2
2699 Male, age 18, unknown 82.6
2409 Female, age 72, unknown 74.1
2583 Male, age 75, right hemisphere 61.7
2590 Female, age 75, unknown 47.0
Superior colliculus
nTPM: 112.5
2668 Female, age 75, unknown 285.0
1895 Male, age 76, right hemisphere 133.6
2664 Male, age 75, both hemispheres 120.3
1839 Male, age 51, unknown 114.1
2087 Female, age 72, unknown 101.6
1796 Male, age 53, unknown 97.4
2261 Male, age 18, unknown 90.4
2587 Male, age 74, left hemisphere 80.2
1913 Female, age 42, unknown 55.3
1995 Male, age 72, unknown 46.6
Ventral tegmental area
nTPM: 86.6
2218 Male, age 76, both hemispheres 101.4
1915 Female, age 42, unknown 99.9
2410 Female, age 72, unknown 94.9
1942 Male, age 51, unknown 83.8
2223 Female, age 72, unknown 73.9
2021 Male, age 53, unknown 65.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 183

Max nTPM: 158.0
Min nTPM: 1.6
Std nTPM: 23.4
Median nTPM: 20.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 123.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 81.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 81.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 71.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 70.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 70.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 69.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 68.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 135.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.5
Samples: 4

Max nTPM: 114.4
Min nTPM: 38.8
Sample A Female 113.7
Sample B Female 55.2
Sample C Male 114.4
Sample D Male 38.8
Midbrain
nTPM: 116.0
Samples: 4

Max nTPM: 175.2
Min nTPM: 43.3
Sample A Female 43.3
Sample B Female 76.7
Sample C Male 168.7
Sample D Male 175.2
Periaqueductal gray
nTPM: 89.9
Samples: 3

Max nTPM: 108.8
Min nTPM: 77.6
Sample B Female 83.3
Sample C Male 108.8
Sample D Male 77.6
Superior colliculi
nTPM: 135.7
Samples: 4

Max nTPM: 166.8
Min nTPM: 63.6
Sample A Female 156.8
Sample B Female 63.6
Sample C Male 166.8
Sample D Male 155.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 249.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 249.0
Samples: 4

Max nTPM: 267.3
Min nTPM: 233.1
Sample A Male 233.1
Sample B Male 246.7
Sample C Female 267.3
Sample D Female 248.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
100144175 Antisense, RP_110407_03_C11, Mouse strain C57BL/6J (56 days, male) 16.7

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