A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
1.4
nTPM
Schmiedel:
19.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1003
0.1
P10809_1020
0.1
P10809_1039
0.1
P10809_1058
0.3
P10809_1080
0.0
P10809_1107
0.4
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
0.0
P10809_1042
1.4
P10809_1061
0.0
P10809_1081
0.3
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
Monaco sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 4
Max nTPM: 1.9
Min nTPM: 0.4
RHH5313_R3680
1.7
RHH5221_R3593
0.4
RHH5250_R3622
0.7
RHH5279_R3651
1.9
Intermediate monocyte nTPM: 1.4
Samples: 4
Max nTPM: 2.0
Min nTPM: 1.0
RHH5314_R3681
2.0
RHH5222_R3594
1.0
RHH5251_R3623
1.5
RHH5280_R3652
1.2
Non-classical monocyte nTPM: 0.9
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.2
RHH5315_R3682
1.6
RHH5223_R3595
0.2
RHH5252_R3624
1.2
RHH5281_R3653
0.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
Schmiedel sample id
TPM
Classical monocyte TPM: 19.6
Samples: 91
Max TPM: 29.8
Min TPM: 9.2
MONOCYTES_1
29.8
MONOCYTES_2
29.2
MONOCYTES_3
28.8
MONOCYTES_4
28.6
MONOCYTES_5
27.0
MONOCYTES_6
26.9
MONOCYTES_7
26.9
MONOCYTES_8
26.8
MONOCYTES_9
26.2
MONOCYTES_10
26.1
MONOCYTES_11
25.7
MONOCYTES_12
25.4
MONOCYTES_13
25.1
MONOCYTES_14
25.1
MONOCYTES_15
25.1
MONOCYTES_16
24.8
MONOCYTES_17
24.8
MONOCYTES_18
24.5
MONOCYTES_19
24.3
MONOCYTES_20
24.2
MONOCYTES_21
24.1
MONOCYTES_22
24.1
MONOCYTES_23
24.1
MONOCYTES_24
23.6
MONOCYTES_25
22.9
MONOCYTES_26
22.8
MONOCYTES_27
22.4
MONOCYTES_28
22.3
MONOCYTES_29
22.1
MONOCYTES_30
22.0
MONOCYTES_31
22.0
MONOCYTES_32
22.0
MONOCYTES_33
21.7
MONOCYTES_34
21.6
MONOCYTES_35
21.6
MONOCYTES_36
21.6
MONOCYTES_37
21.5
MONOCYTES_38
21.4
MONOCYTES_39
21.1
MONOCYTES_40
20.9
MONOCYTES_41
20.7
MONOCYTES_42
20.6
MONOCYTES_43
20.3
MONOCYTES_44
20.3
MONOCYTES_45
20.1
MONOCYTES_46
20.1
MONOCYTES_47
19.9
MONOCYTES_48
19.5
MONOCYTES_49
19.3
MONOCYTES_50
18.9
MONOCYTES_51
18.6
MONOCYTES_52
18.3
MONOCYTES_53
18.2
MONOCYTES_54
17.9
MONOCYTES_55
17.9
MONOCYTES_56
17.8
MONOCYTES_57
17.8
MONOCYTES_58
17.5
MONOCYTES_59
17.3
MONOCYTES_60
17.2
MONOCYTES_61
17.0
MONOCYTES_62
16.9
MONOCYTES_63
16.5
MONOCYTES_64
16.5
MONOCYTES_65
16.4
MONOCYTES_66
16.3
MONOCYTES_67
16.2
MONOCYTES_68
16.0
MONOCYTES_69
15.9
MONOCYTES_70
15.7
MONOCYTES_71
15.7
MONOCYTES_72
14.8
MONOCYTES_73
14.7
MONOCYTES_74
14.4
MONOCYTES_75
14.4
MONOCYTES_76
14.2
MONOCYTES_77
14.2
MONOCYTES_78
14.1
MONOCYTES_79
13.8
MONOCYTES_80
13.5
MONOCYTES_81
13.3
MONOCYTES_82
12.9
MONOCYTES_83
12.7
MONOCYTES_84
11.9
MONOCYTES_85
11.6
MONOCYTES_86
11.1
MONOCYTES_87
11.1
MONOCYTES_88
11.0
MONOCYTES_89
11.0
MONOCYTES_90
10.5
MONOCYTES_91
9.2
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Non-classical monocyte TPM: 13.4
Samples: 90
Max TPM: 22.5
Min TPM: 4.6
M2_1
22.5
M2_2
22.0
M2_3
20.0
M2_4
19.9
M2_5
19.9
M2_6
19.4
M2_7
19.2
M2_8
18.8
M2_9
18.6
M2_10
18.6
M2_11
18.5
M2_12
18.4
M2_13
18.2
M2_14
17.7
M2_15
17.6
M2_16
17.5
M2_17
17.5
M2_18
17.2
M2_19
17.0
M2_20
17.0
M2_21
17.0
M2_22
16.8
M2_23
16.7
M2_24
16.2
M2_25
16.1
M2_26
16.1
M2_27
16.0
M2_28
16.0
M2_29
15.9
M2_30
15.9
M2_31
15.8
M2_32
15.7
M2_33
15.6
M2_34
15.1
M2_35
15.1
M2_36
15.1
M2_37
14.9
M2_38
14.8
M2_39
14.8
M2_40
14.7
M2_41
14.5
M2_42
14.4
M2_43
14.1
M2_44
14.0
M2_45
14.0
M2_46
13.8
M2_47
13.7
M2_48
13.7
M2_49
13.3
M2_50
13.3
M2_51
13.0
M2_52
13.0
M2_53
12.9
M2_54
12.8
M2_55
12.6
M2_56
12.6
M2_57
12.1
M2_58
12.0
M2_59
11.8
M2_60
11.8
M2_61
11.2
M2_62
11.1
M2_63
10.8
M2_64
10.5
M2_65
10.3
M2_66
9.8
M2_67
9.7
M2_68
9.6
M2_69
9.5
M2_70
9.5
M2_71
9.5
M2_72
9.5
M2_73
9.3
M2_74
8.6
M2_75
8.5
M2_76
8.3
M2_77
8.1
M2_78
7.8
M2_79
7.6
M2_80
7.4
M2_81
7.4
M2_82
7.4
M2_83
7.3
M2_84
7.1
M2_85
7.0
M2_86
6.6
M2_87
6.4
M2_88
4.8
M2_89
4.6
M2_90
4.6
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